BiaPy

@biapyx.bsky.social

323 Followers 107 Following

Accessible deep learning on bioimages Site: https://biapyx.github.io/ Doc: https://biapy.readthedocs.io/en/latest/ Code: https://github.com/BiaPyX/BiaPy

Screenshot of the Galaxy application in a browser, showing the BiaPy tool selected and its parameter selection options.
Screenshot of the BiaPy site showing the developing team: Daniel Franco-Barranco Jesús A Andrés-San Román Ivan Hidalgo-Cenalmor Lenka Backová Aitor González-Marfil Clément Caporal Anatole Chessel Pedro Gómez-Gálvez Luis M Escudero Donglai Wei Arrate Muñoz-Barrutia Ignacio Arganda-Carreras
Visual description of the multiple options available to interact with BiaPy: GUI (with friendly wizard), Google Colab and Jupyter notebooks, Docker container and terminal (library use).
Overview of BiaPy's available workflows: semantic segmentation, single-image super-resolution, image denoising, self-supervised learning, instance segmentation, object detection, image classification and image-to-image translation.
Animated gif showing an overview of BiaPy's features: its community inspiration, the diverse input data and analysis tasks, and its backend (PyTorch) and multiple frontends (GUI, notebooks, library).
Screenshot of a BiaPy notebook showing the "Play to reinstall Colab libraries so they are compatible with BiaPy" cell. The cell has been executed and Colab shows a message stating "Your session crashed for an unknown reason."
Screenshot of BiaPy notebook showing the installation section. The first part of section reads "Play to reinstall Colab libraries so they are compatible wiht BiaPy. ⚠️ Wait until this cell is fully executed to run the next one ⚠️ This will make the notebook restart. Do not worry and continue executing the next cell once this one is finished."
Screenshot of BiaPy's GUI showing the Wizard window but partially occluded by a "Available pretrained models" dialog showing a model from the BioImage Model Zoo and a model from Torchvision.
Screenshot of BiaPy's GUI in macOS, showing the Docker container downloading process. On the top part, a progress bar shows the downloaded percentage, while in the bottom, a black log window displays the text outputs of the process.
Screenshot showing BiaPy's GUI and, on top of it, the initial page of the initial tour window.
Splash screen shown when starting BiaPy's GUI. It shows BiaPy's logo (a boat with a microscope on top) on a circular white background.