John M. Drake @jdrakephd.bsky.social Professor of Ecology at the University of Georgia. Views are my own.
http://jdrakephd.substack.com
Ali Molloy @oioimolloy.bsky.social Creative thinker and tinkerer, often found curiously lurking between the sciences and the arts.
https://www.alimolloy.com
Ben Vezina @bananabenana.bsky.social Computational Biology | Microbiology | Molecular Biology postdoc.
Right now I do lots of stats, ML, metabolic modelling, vis, and quantitative genomics
can we pls fix greenhouse emissions, gov, pls
Kevin Bonham @kevinbonham.com Assistant Professor at Tufts Medicine studying microbes, brains, and the immune system 🚽🦠🧠
Fermenter, gardener, Zen Buddhist. Ask me about #julialang!
🎙️: https://audiommunity.org
🌎: https://bonhamlab.bio
💻: https://GitHub.com/kescobo
Adrian Cazares @cazares-adr.bsky.social Bacterial Mobile Evolution. Staff Scientist at Sanger Institute. I study how pathogens emerge and evolve by sharing genes. Interested in AMR, Plasmids, Phages, ICEs, and everything that moves within and between genomes.
Freya Harrison @friendlymicrobe.bsky.social Reader (Associate Professor) in Microbiology at the University of Warwick, UK.
Biofilm, chronic infection and ancientbiotics.
https://www.youtube.com/@BreakingBiofilm
Gabriele Pollara @gpollara.bsky.social Infectious Diseases doctor (at UCLH) and academic (at UCL). Research focuses on host-pathogen interactions in TB, leprosy and UTIs. What are the immune, epithelial and stromal cell responses involved, and could they be targets for host-directed therapies?
Stephanie Lo @stephlo.bsky.social Senior Staff Scientist @ Sanger Institute
Senior Lecturer @ University of Bath
Leading the Global Pneumococcal Sequencing project, inform vaccine design and promote equality in science
@iruka-okeke.bsky.social @iruka-okeke.bsky.social
Ant Underwood @bioinformantics.bsky.social Head of Bioinformatics at Broken String Biosciences.
https://www.brokenstringbio.com/
Still love microbial bioinformatics. Now working in the cell and gene therapy space. Keen Python and Nextflow coder
AMRWatch @amrwatch.bsky.social Platform for monitoring antimicrobial resistance (AMR) trends from global genomics data.
Developed by the Centre for Genomic Pathogen Surveillance, University of Oxford.
https://amr.watch
Microreact @microreact.bsky.social Open data linkage, visualisation and sharing for genomic epidemiology and phylogeography. Developed by the Centre for Genomic Pathogen Surveillance, University of Oxford.
microreact.org
Pathogenwatch @pathogenwatch.bsky.social A global platform for genomic pathogen surveillance. Developed by the Centre for Genomic Pathogen Surveillance, University of Oxford, UK.
Centre for Genomic Pathogen Surveillance @thecgps.bsky.social We provide data, insight and tools for pathogen surveillance and AMR research. Based at the Pandemic Sciences Institute, University of Oxford, UK.
M. Nolan Gray 🥑 @mnolangray.bsky.social the once and future city planner // chief urban planner METROPOLITAN ABUNDANCE PROJECT // AICP // YIMBY // #BBN // author of hit broadway musical arbitrary lines
Tom Stanton @tomstantonmicro.bsky.social Microbiologist. Lead developer of #Kaptive + bonafide #Klebsiella nerd. Post-doc in the Wyres Lab @AlfredMonash_ID.
Sophia David @sophia-david.bsky.social Mum to 👦🏻👶🏻. Senior Research Fellow at the Centre for Genomic Pathogen Surveillance, University of Oxford. Bacterial genomes and AMR 🧬 🦠 Love running and the outdoors 🏃🏼♀️🌿
The Onion @theonion.com America’s Finest News Source. A @globaltetrahedron.bsky.social subsidiary.
Get the paper delivered to your door: membership.theonion.com
Join The Onion Newsletter: https://theonion.com/newsletters/
Andrew Singer @oxonandrew.bsky.social Environmental Microbiologist, Pollution Scientist; 327.66 ppm CO2 #AMR #OneHealth #WBE #CSO
Previously: https://twitter.com/OxonAndrew
https://www.ceh.ac.uk/staff/andrew-singer
Emma Doughty @emmadoughty.bsky.social Genomicist 🧬 at the intersection of bioinformatics 💻, epidemiology🫂 and global public health 🌍
Chris Stewart @stewartlab.bsky.social Professor of Human Microbiome Research at Newcastle University.
Using 'omics and organoids to study diet-microbe-host interaction.
Microbiome; Microbiology; preterm infant; necrotising enterocolitis; inflammatory bowel disease; cancer.
He/Him
Dan Neidle @danneidle.bsky.social Founder of Tax Policy Associates Ltd. Tax realist. @danneidle on Twitter
Martin Robbins @mjrobbins.com Substack: mjrobbins.com
Podcast: abundancepod.com
Rogier van Doorn @hrvd.bsky.social Director of Oxford University Clinical Research Unit in Hanoi
Professor of Infectious Diseases at University of Oxford
Views are my own
Ella Rodwell @ellarodwell.bsky.social Epidemiologist 📍Gastrointestinal Infections & Food Safety 🧬 Public Health
Emma Slack @mucosalimmunology.bsky.social Professor for Mucosal Immunology, ETH Zürich, Switzerland, and Sir William Dunn School of Pathology, Oxford, UK. We work on novel oral vaccines, AMR, and microbiome function. Making science fairer, kinder and more equitable 🏳️🌈🏳️⚧️. Views are my own.- M Marc Lipsitch @mlipsitch.bsky.social Professor of Epidemiology Harvard Chan SPH, Director, @ccdd-hsph.bsky.social. Views my own.
Youssef El Mouali @youssefelmouali.bsky.social Microbiome and RNA. Postdoc at Till Strowig Lab Helmholtz HZI. Former Jörg Vogel Lab Helmholtz HIRI. Alumni @UniBarcelona
Danielle Ingle @danielleingle.bsky.social Research Fellow at the University of Melbourne
enteric bacteria, evolutionary dynamics, antimicrobial resistance, genomic epidemiology
Katherine Horton @kchorton.bsky.social Infectious disease epidemiologist | Assistant Professor in #TB modelling @lshtm-tbmod.bsky.social @lshtm.bsky.social | Mama to 👦👦👦🐶
Thomas Kesteman🦠🧫🔬🌏 @tomk.eurosky.social Clinical microbiology in LMIC & ID Epidemiology. Concerned about inequities and scientific integrity, yet dyed-in-the-wool optimist. All views my own, but I share because sharing is caring. (he/him/his)
Itai Yanai @itaiyanai.bsky.social Professor at the NYU School of Medicine (https://yanailab.org/). Co-founder and Director of the Night Science Institute (https://night-science.org/). Co-host of the 'Night Science Podcast' https://podcasts.apple.com/us/podcast/night-science/id1563415749
Thomas P200 Burke @findmeinthelab.bsky.social Asst Prof at UC Irvine. Studying host-pathogen interactions, microbial cancer therapies.
Expert takes on unserious content
burkelab.medschool.uci.edu
Jason Andrews @jasonandrews.bsky.social infectious diseases physician + Prof @Stanford
tuberculosis, typhoid, diagnostics, genomic epidemiology, carceral health
https://med.stanford.edu/profiles/jason-andrews
@jacarrico.bsky.social @jacarrico.bsky.social
@mattbawn.bsky.social @mattbawn.bsky.social Senior Lecturer Microbial Genomics Newcastle University
Bill Hanage @billhanage.bsky.social Refugee from Twix. Arsenal fan and Professor of Epidemiology at Harvard T. H. Chan School of Public Health. Opinions my own.
Zamin Iqbal @zaminiqbal.bsky.social Professor of Algorithmic and Microbial Genomics at the University of Bath (UK). Pangenomes, drug resistance (esp TB), data structures for DNA search, plasmid evolution, global microbial surveillance. Open Data, reproducibility. https://zam-iqbal-lab.org/
Dr Emma Hodcroft @firefoxx66.bsky.social Die Virenjägerin! 🏹🧬!
Using programming & phylogenetics, I study & track viruses. Co-developer of Nextstrain, based at Swiss TPH & Uni Basel.
Founder of CoVariants.org, co-founder of @pathoplexus.org
I like 🐈 & 🛫
@firefoxx66@mstdn.science
Torsten Seemann @torstenseemann.bsky.social Professor @ University of Melbourne, Australia
Microbial bioinformatics, genomics, software, clinical and public health microbiology
https://tseemann.github.io
Matt Loose @minomatt.bsky.social Sequencing, adapting and exploring genomes.
https://linktr.ee/matt.loose
Jonathan Jacobs @bioinformer.bsky.social UofArizona #Aggie > UofMaryland PhD > NIH/NCI PostDoc > > > ATCC #Genomics, #Bioinformatics, Data Authenticity, #BioSecurity. 🎲♟️👾🎮 🎸 🧪 🧬 🖥 🦠🚀🏎️ he/him.
https://bioinformer.substack.com
Lee Katz @lskatz.github.io Co host of the Micro Binfie podcast
Finlay Maguire @finlaym.bsky.social Ast Prof CS+Epi at Dalhousie/Pathogenomics Bioinformatics Lead at Shared Hospital Lab (Sunnybrook): infectious disease genomic epidemiology (AMR/SC2/Zoonoses) & socially-focused collab data science (he/him)
Kai Blin @kblin.bsky.social Microbiology PhD, co-author of antiSMASH, Open Source geek, views are my own. @kblin@scholar.social
Simon Harris @simonrharris.bsky.social Senior Program Officer in the Genomic Epidemiology and Modelling team at The Bill & Melinda Gates Foundation. Pathogen genomics and bioinformatics.
John Lees @johnlees.bacpop.org Pathogen informatics and modelling http://bacpop.org
(Research group leader at EMBL-EBI - http://ebi.ac.uk/research/lees/)
Conor (Conchúr) Meehan @conmeehan.bsky.social Researching WGS/Epi/Taxonomy of pathogenic mycobacteria and evo of microbiomes. Irish-born, Nottingham-working. Call me Conchúr if you can pronounce it. He/They
https://www.ntu.ac.uk/staff-profiles/science-technology/conor-meehan
Alison Mather @alisonmather.bsky.social Epidemiology, microbial (meta)genomics, antimicrobial resistance, One Health, Professor of Microbial Genomic Epidemiology at Quadram Institute Bioscience & University of East Anglia.
Colman O'Cathail @colmanoc.bsky.social ENA Project Lead & Product Owner @ebi.embl.org | Bioinformatics services and infrastructure | @enasequence.bsky.social
Keith Jolley @kjolley.bsky.social Bioinformatician in the Department of Biology, University of Oxford.
Working on microbial genomics | Developer of @PubMLST.org and BIGSdb | https://orcid.org/0000-0002-0751-0287
Tom Connor @tomrconnor.bsky.social Public health genomics and big computers working in Wales. Parent of two small children. Gamer, foodie, geek. Also likes cats. Views my own.
Aldert Zomer @aldertzomer.bsky.social Associate Professor at Utrecht University, Infectious Diseases & Immunology. (meta)genomes, AMR, zoonotic pathogens. Cookie and cake connoisseur.
publications: https://scholar.google.com/citations?hl=nl&user=VHHhpoAAAAAJ&view_op=list_works&sortby=pubdate
Eva Heinz @evaheinz7.bsky.social Fighting mental health stigma and toxic research culture. Proud to support https://twloha.com/.
And when life gives you lemons, make a G&T.
She/Her
Rob Kingsley @drrobkingsley.bsky.social Professor of Microbiology @uniofeastanglia and Group Leader @TheQuadram, Norwich, UK - genomics, AMR, host-pathogen interactions, phage, microbiome
Editor Communications Biology
Inês Mendes @inesmendes.bsky.social Senior Bioinformatics Scientist @ Theiagen Genomics
PhD in Microbial Bioinformatics
Ruth E. Timme @ruthtimme.bsky.social Public health scientist in pathogen genomic surveillance . twin mama . botanist by training . birder . (tweets are my own)
Boas van der Putten @boasvdp.bsky.social EUPHEM fellow/bioinformatician at RIVM, NL
Andries van Tonder @andriesvt.bsky.social Senior Teaching Associate/Research Associate in Genetics & Veterinary Medicine @ University of Cambridge
Jen Guthrie @jenlguthrie.bsky.social Assistant Prof @WesternU | Adjunct Scientist @PublicHealthON | Canada Research Chair in Pathogen Genomics and Bioinformatics | Epidemiology | TB | AMR | MRSA
@kevinlibuit.bsky.social @kevinlibuit.bsky.social
Wytamma @wytamma.bsky.social Enjoying the little things like antibodies, ion channels and pip installs - technical biologist building tools and studying diseases ❤️🐢
Natacha Couto @natachacouto.bsky.social Scientist, One Health, AMR, Genomics
Chris Kent @chris.primalscheme.com PhD student in the Quick Lab with @articnetwork.bsky.social
Jess Chen @drjesschen.bsky.social Mom, wife, birder, bike commuter, and microbial bioinformatician.
Geoff Winsor @glwinsor.bsky.social PhD candidate and database developer (bioinformatics, Pseudomonas Genome Database) at SFU. Exposome-microbiome interactions, data integration, bacterial genomics, genome annotation.
Claire Gorrie @clairegorrie.bsky.social Postdoc with MDU @dohertyinstitute @unimelb
Interested in bacterial genomics and bioinformatics, particularly re: AMR transmission in hospitals.
Views my own. She/her.
Andrea Telatin @telatin.bsky.social Head of bioinformatics at the Quadram Institute - https://github.com/telatin/
Mitchell Sullivan @mjsull.bsky.social Microbinfie
Theiagen Genomics @theiagen.bsky.social Transforming public health and infectious disease surveillance through the innovative implementation of #NGS and #bioinformatics technologies.
Sage Wright @sagewright.bsky.social Bioinformatics and cats
Meaghan Kall @kallmemeg.bsky.social Epidemiologist, public health trainee, mom, wife. Formerly @UKHSA. Disability advocate. Born 🇺🇸 Migrated 🇬🇧. 🏳️🌈 Personal account.
Kristian G. Andersen @kgandersen.bsky.social Infectious diseases & genomics. Immunologist in (voluntary) exile. Minimal sarcasm. Fierce HOA (Hater of Acronyms). Personal account - opinions expressed are my own and not those of my employer.
Cornelius Roemer @corneliusroemer.bsky.social Studying SARS-CoV-2 evolution @nextstrain @biozentrum
Studied Physics @Cambridge Uni, then learned about computers
Dr. Amy Lee @minisciencegirl.bsky.social Assistant Professor @ SFU MBB | Systems Biology of Host-Pathogen | Vaccinology | Neonatal Sepsis | Pathogen Genomics | Loves data, food & art.
Erin Young @erinyoung.bsky.social Public Health #Bioinformatician. Wants to sequence ALL THE THINGS. Personal account with alternative spellings and grammar structures. She/her
Aaron Quinlan (he/him) @aaronquinlan.bsky.social Origins and consequences of genome mutation; software for genomic discovery.
Prof. and Chair of Human Genetics at U. of Utah.
https://www.genetics.utah.edu/
http://quinlanlab.org
Nabil-Fareed Alikhan @happykhan.mstdn.science.ap.brid.gy Admin for @mstdn.science. #bioinformatician. Interested in #microbiology and #genomics.
🌉 bridged from ⁂ https://mstdn.science/@happykhan, follow @ap.brid.gy to interact
Chaoran Chen @chaoranchen.de Scientific software engineer at ETH Zurich, founder of GenSpectrum.org, co-founder of Pathoplexus.org, always looking for recommendations for board games 🎲 and books 📚
Gerry Tonkin-Hill @gerrythill.bsky.social Group leader at Peter Mac & the Doherty Institute in Melbourne, Australia
microbial genomics, statistics, machine learning
Liz Batty @lizbatty.bsky.social Crisp-loving nerd and swim headphones influencer. Bioinformatician and molecular microbiologist focused on tropical diseases. Live in Bangkok, do a podcast, drink coffee, go to the beach.- K karinlag.bsky.social @karinlag.bsky.social
Dr. Kelly O. @drkfo.bsky.social Chief Scientist for Next-Generation Sequencing & Bioinformatics at The Utah Public Health Laboratory
🌟 SEQUENCE ALL THE THINGS! 🌟
I oversee all the sequencing and data analysis for infectious disease pathogens for the state. All opinions are my own!
Kelsey Florek @k-florek.net Infectious Disease Genomics and Data Scientist @ Wisconsin State Laboratory
#publichealth, #genomics, #infectiousdiseases, #openscience, #opendata
Personal account, art and opinions are my own.
Noah Hull @noahhullphd.bsky.social Global public health practitioner, all things NGS, bioinformatics, random 🐶s, and, wastewater
📜: UWyo (BSc - MolB; PhD - infect disease epi; ScD [h.c.], and UAB MPH-Epi)
Mountain West located, but missing the ocean. Views, albeit bad ones, are my own
Olin Silander @osilander.bsky.social DNA
Jessica Blair @jessicamablair.bsky.social Professor of Antimicrobial Resistance. Institute of Microbiology and Infection, University of Birmingham. Director University of Birmingham Doctoral School. Editor in Chief of npj Antimicrobials and Resistance. - M Meera Chand @meerac.bsky.social Infectious diseases, microbiology, virology, public health and particularly emerging infections & genomics @UKHSA
Chris Fields @cjfields.bsky.social Microbiologist turned computational biologist
Bioinformatics Core Director, HPCBio
Open Bioinformatics Foundation Board Member
#metagenomics #microbiome #pangenomics
#python #r (yeah yeah, and #bioperl)- A Angie Hinrichs @angieshinrichs.bsky.social Working on the UCSC Genome Browser since 2002, SARS-Cov-2 phylogenetics since 2020. Opinions my own not employer's. she/her
Bede Constantinides @bede.im Research fellow at the University of Birmingham interested in infectious disease informatics. Also cycling, photography, active travel. https://bede.im
Nicole Wheeler @nwheeler443.bsky.social
Sam Horsfield @samuelhorsfield.bsky.social Postdoc @ University of Neuchâtel, Laboratory of Evolutionary Genetics 🦠 Working on methods to study pathogen evolution and epidemiology using pangenomics 🧬 https://samhorsfield96.github.io/my-website/ 🌐
Peter Menzel @pmenzel.bsky.social Bioinformatics Scientist at Labor Berlin | Clinical Bioinfo | menzel.tech | github.com/pmenzel | ❤️#rstats
Abraham Gihawi @abrahamgihawi.bsky.social UEA Research Fellow - Bioinformatics - Cancer (meta)genomics since 2017.
Opinions are mine alone.
Scott V. Nguyen @scottnguyen.bsky.social I study cells and love watching supercells. Senior biocurator at the ATCC.
Mat Beale @typemat12.bsky.social Microbial (meta)genomics researcher @sangerinstitute
interested in genomic epidemiology and evolutionary dynamics of STIs/NTDs/AMR in complex samples. Views my own.
https://www.sanger.ac.uk/person/beale-mathew/
Segata Lab @cibiocm.bsky.social The Laboratory of Computational Metagenomics led by Nicola Segata
**We are hiring, get in touch if interested!**
http://segatalab.cibio.unitn.it/
Moderator @svetlanaup.bsky.social
Verity Hill @viralverity.bsky.social Wellcome ECA Fellow at the Centre for Virus Research, University of Glasgow
Phylodynamics for public health
https://viralverity.github.io
She/her