Jeremie Kalfon πŸ‘¨β€πŸ’»πŸ§¬πŸ€–πŸš€ @jkobject.com Β· Nov 19

However, working with gene networks, I have seen various ways to store them throughout the different papers and benchmarks. Often as some kind of tsv/csv/… file with some kind of a gene-gene list. This lack of standard makes it quite hard to work with gene networksπŸ™‰ 3/6

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Jeremie Kalfon πŸ‘¨β€πŸ’»πŸ§¬πŸ€–πŸš€ Β· Nov 19

Interestingly, there is a possible standard for it! πŸŽ‰AnnData contains the .varp field which is made to store var to var (e.g. genes to gene) relationships. However not many people use it… 4/6