Karel "CaCO3" Berka

@krapnik.bsky.social

2004 Followers 4760 Following

theoretical physical chemist, molecular modeller and chem- and bioinformatician - #AlphaFoldology enthusiast Palacky University Olomouc, ORCID:0000-0001-9472-2589 #boardgamegeek (tweets my own) #ELIXIRCZ

GHR model from AF3 with OLA to model membrane
Olomouc na Zemi, Zeměkoule na AFO v Olomouci
ovladani vozitka na Marsu
David Hoksza concluding the 2nd Czech PhD Bioinformatics conference
RAGE protein target
Vaishali Pankaj shows the results of MM-GBSA
EasyDock
Tomas Pavlik trying to shine metadata annotation on the dark matter of molecular dynamics simulations
Martin Havlásek presents AggreProt
Recipe for complete genome read
EnzymeMiner workflow explained by Monika Rosinska
Samuel Gorta speaking about extending of MD simulations via Latent space projection
Adrian Rosinec on MDFind
Terezia Slaninakova from @municz on Alphafind
Abdulman Kahraman invited lecture on hitting Cancer hard with bioinformatics/data science in Precision Oncology
JMHZ nefunguje. uz zase
Mtb ATPsynthase
9ADD logo
winning 1.round of UP AZ-kviz
Karel Berka - M:tG card
Dan Přibáň speaking about a journey to Mongolia with yellow frogs Végu a Vóža
Molecular Pour Felicitation 2026 Done in Rowansci.com module using two-endTS optimization with OMol25's eSEN Conserving Small
fake Nobel prize for Donald Trump
fake Nobel prize in Ecology 2025
Journal of Immaterial research awarded RFK Jr. “for taking bold action to reduce life expectancy in the USA”
bacteriophage phiX174 #3Dprint model
ferritin 3d model
depiction of my professorship appointment from the hand of prezident of Czech Republic by my students
I have received my Professorship in Biomolecular Chemistry and Structural Biology today from the hands of our President Petr Pavel
ELIXiR GREECE move to AI
missprint
weird surface happening with PLA
preklad cardinal numbers
kdo umí, umí
kostel sv. Barbory v Kutné hoře
group photo of participants of the 1st ELIXIR CZ PhD conference
on B factors
how to use autoencoder latent spaces for protein evolution and design
QR codes for successor prediction tool and FireprotASR database
Monika Rosinska on design of proteins by anticipating evolution
how to train the latent space from MD to fit any distribution - even logo of @vschtpraha.bsky.social
immunization
high throughput MD
Jesuit cellar bellow the monastery
take home message
training.galaxyproject.org
Czech tools innGalaxy
use case on SARS-Cov-2
galaxy
usage of metacentrum
Galaxy intro by Martin Čech
ribosome
abstract thinking on ontologies
biological ontology philosophy
capturing protein dynamics and its determinants using explainable AI
conference is well attended ;)
nano luciferase
differences between TYV and BrYV
turnip yellow virus
metabolic flux and transcriptomic analysis of metachronous colorectal liver metastasis