Hans-Rudolf Hotz @hrhotz.bsky.social Molecular Biologist turned Bioinformatician working in the Computational Biology facility at the Friedrich Miescher Institute in Basel
Open Science, Training/Mentoring, #UseGalaxy, Bioconductor
Charlotte Bunne @bunnech.bsky.social Assistant Professor at @EPFL in Computer Science and Life Sciences. PostDoc at @Genentech and @Stanford. PhD at @ETH and @BroadInstitute.
www.aimm.epfl.ch- S Andrew Gelman et al. @statmodeling.bsky.social Automatically tweets new posts from http://statmodeling.stat.columbia.edu
Please respond in the comment section of the blog.
Old posts spool at https://twitter.com/StatRetro
Ben Bolker @bbolker.bsky.social Ecology, evolution, epidemiology, statistics (mixed models). McMaster University, Hamilton, Ontario https://math.mcmaster.ca/bolker
Johannes Soltwedel @jo-soltwedel.bsky.social Research software engineer @gerbi-gmb.de for all things #OME-ZARR, #NGFF, FAIR data.
Physicist, Python code-jockey, train enthusiast.
Aki Vehtari @avehtari.bsky.social Professor in computational Bayesian modeling, Aalto University, Finland. Co-author of Bayesian Data Analysis 3rd ed, Regression and Other Stories, Active Statistics and Bayesian Workflow. #mcmc_stan and #arviz developer.
https://users.aalto.fi/ave/
#SingleCell preprints @prepub-singlecell.bsky.social feeds: biorxiv, medrxiv, arxiv.q-bio, arxiv.cs, arxiv.math, Research Square
regex: '(single(- )(cell|nuclei)|s[cn]RNA-seq)'
If you have suggestions, please get in contact with @willmacnair :)
Richard McElreath 🐈⬛ @rmcelreath.bsky.social Anthropologist - Bayesian modeling - science reform - cat and cooking content too - Director @ MPI for evolutionary anthropology https://www.eva.mpg.de/ecology/staff/richard-mcelreath/
OME @openmicroscopy.org OME is a consortium of universities, research labs, industry and developers producing open-source software and format standards for microscopy data.
https://www.openmicroscopy.org/
EMBL-EBI Training @training.ebi.embl.org Delivering world-class bioinformatics training in data-driven life sciences virtually and onsite at EMBL's European Bioinformatics Institute in Hinxton, UK.
www.ebi.ac.uk/training
@christofseiler.bsky.social @christofseiler.bsky.social Applying statistics to biomedicine.
ORCID: https://orcid.org/0000-0001-8802-3642
Umut Kilik @umut-kilik.bsky.social Postdoc @ FMI Basel (Turco Lab) | Exploring endometrium regeneration & niche 🌱🩸 | Human model systems + single-cell genomics + evo-devo | Former PhD @ IHB (Camp Lab)
FMI science @fmiscience.bsky.social The Friedrich Miescher Institute for Biomedical Research (FMI), affiliated with @unibas.ch and @novartis.bsky.social, conducts research at the forefront of biomedicine and trains the next leaders in the life sciences.
Swiss National Science Foundation (SNSF) @snsf.ch The Swiss National Science Foundation funds excellent research at universities and other institutions – from chemistry to medicine to sociology.
We invest in researchers and their ideas 🔬🌱📚 — www.snf.ch/en
© Images: Impressum
Department of Biomedicine🔬🧪 @biomedizin.unibas.ch As a joint venture of the University of Basel and the University Hospitals Basel, the Department of Biomedicine (DBM) brings together basic and clinical scientists to advance our understanding of health and disease.
Ben Gallusser @bengallusser.bsky.social Deep Learning, Computer Vision, Biology
Anne-Laure Boulesteix @boulesteixlaure.bsky.social Statistician and metascientist. Professor of biometrics at LMU Munich Medical and Mathematical Faculties, committed to open science, member of the Munich Center of Machine Learning. Opinions are mine.
Michael Doube @mdoube.bsky.social Pixel herder
Juan Nunez-Iglesias @jni.codes Co-founder, core developer, and steering council member of @napari.org
Also other FOSSy and Science-y things.
I prefer Mastodon (profile at https://fosstodon.org/@jni) but begrudgingly checking things out here. 😂
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social NFDI4BIOIMAGE, a consortium of the NFDI in Germany, is a legally non-independent collaboration project. It focuses on research data management for bioimaging and image analysis. The consortium does not act autonomously towards third parties.
Pau Badia i Mompel @paubadiam.bsky.social Postdoctoral researcher at @anshulkundaje.bsky.social Machine learning #ML, gene regulatory networks #GRN, single cell and spatial #omics.
Previously at @saezlab.bsky.social
Core developer of https://decoupler.readthedocs.io/ at @scverse.bsky.social
Olga Ivanova @ivanovaos.bsky.social 
Bárbara Zita Peters Couto @barbarazpc.bsky.social phd student @saezlab.bsky.social 💻 ✨
trying to reduce pain in this world by studying diseases + drugs 💊
also super interested in figuring out how to prevent misinformation in society 🔑
Sophia Müller-Dott @smuellerdott.bsky.social PhD candidate at saezlab.bsky.social in computational biomedicine 🔬🧬
European Conference on Computational Biology @eccb-europe.bsky.social The ECCB 25th edition will be hosted by the SIB Swiss Institute of Bioinformatics, for the 1st time in Geneva, 31.08-04.09.2026.
Discover the latest advances in genomics, structural bioinformatics, systems biology, biodiversity & beyond!
www.eccb2026.org
napari @napari.org n-dimensional image viewer for Python
Joe Hamman @jhamman.bsky.social Climate scientist, engineer and human. Co-founder/CTO @earthmoverHQ. @xarray_dev / @pangeo_data dev. Formerly
@carbonplanorg, @NCAR_Science, and @uw_cee. He/him.
MLSB @mlsb-borgwardt.bsky.social Department of #MachineLearning and #SystemsBiology @MPI_Biochem, directed by Karsten Borgwardt
Hadley Wickham @hadley.nz R, data, 🐕, 🍸, 🌈. He/him.
Krishnaswamylab.org @krishnaswamylab.bsky.social We develop AI methods for science, particularly deep learning methods based on data geometry, topology and dynamics systems.
Stephen Turner @stephenturner.us FIeld guide. Quartermaster. Associate Professor and Research Dean at UVA School of Data Science. Views my own.
Web: https://datascience.virginia.edu/people/stephen-turner
Newsletter: https://blog.stephenturner.us
Santiago Carmona 🧬 🖥️ 🧑🏾🔬 @carmonation.bsky.social Computational biologist, associate professor at University of Geneva, Department of Pathology and Immunology. Single-cell omics, bio data science, immunology & cancer research
Jieran Sun @onesinglecell.bsky.social I treat every #singleCell gently. | PhD in Comp Bio at Lausanne University Hospital. #OpenScience #SpatialTranscriptomics
Estella Yixing Dong @estellayixingdong.bsky.social Applied Machine Learning @Bayer | PhD @CHUVLausanne | Immunotherapy, Single-Cell RNAseq, Spatial Transcriptomics, Statistics and Machine Learning. 📷⛸️🏔️- N Nils Gehlenborg @ngehlenborg.bsky.social Associate Professor @ Harvard Medical School Department of Biomedical Informatics. Data Visualization & Biomedical Informatics.
Marius Pachitariu @marius10p.bsky.social Lab head @HHMIJanelia
neuroscience, deep learning, large-scale recordings
#Kilosort, #Suite2p, #Cellpose, #Rastermap, #Facemap
Nav @naveed-ishaque.bsky.social Bioinformatics research group leader at the Berlin Institute of Health, ELIXIR and de.NBI. Main focus: cancer, immunology, placenta, and all things omics... especially spatial omics.
Leica Microsystems @leicamicrosystems.bsky.social 🔬 Leica Microsystems, a Danaher company, supports your work by providing insight you can act on with confidence in #microscopy.
Contact us ⬇️
Instagram: https://fcld.ly/ig
LinkedIn: https://fcld.ly/lk
Website: https://fcld.ly/leicabluesky
Bruker @brukercorporation.bsky.social Bruker’s high-performance scientific instruments and high-value analytical and diagnostic solutions enable scientists to explore life and materials at molecular, cellular, and microscopic levels.
10x Genomics @10xgenomics.bsky.social Enabling researchers to answer biology’s hardest and most elusive questions with innovative #singlecell, #spatialbiology & #insitu technology. 
@danapeer.bsky.social @danapeer.bsky.social 
Rong Fan @rongfan8.bsky.social 
This Week in Linux @thisweekinlinux.bsky.social This Week in Linux (TWIL) is a news show for the Linux and Open Source community. This account is a feed for new TWIL episodes, for everything follow @tuxdigital.bsky.social
Guillaume Witz @guiwitz.bsky.social Curious scientist and classical music enthusiast. Currently Bioimage Analyst and Data Scientist at the Data Science Lab of the University of Bern. Previously @epfl, @harvard, @biozentrum
Joel Lüthi @joelluethi.bsky.social Head of Research and Development of the BioVisionCenter at the University of Zurich
Hugging Face @hf.co The AI community building the future! 
Randall Munroe @xkcd.com 
Virginie Uhlmann @virginieuhlmann.bsky.social Assistant Professor in Bioimaging and Data Analysis and Director of the BioVisionCenter at UZH; Research Group Leader at EMBL-EBI. Loves image analysis, mountains, and birds.
Zarr @zarr.dev Chunked, Compressed, & Cloud-native N-dimensional arrays
See https://zarr.dev/ for more information.
Jonas Windhager @jwindhager.bsky.social Bioimage Analyst / RSE at the SciLifeLab BioImage Informatics Unit
eurobioimaging.bsky.social @eurobioimaging.bsky.social We are Europe's gateway to biological & biomedical imaging expertise. Visit our website: www.eurobioimaging.eu
Profile image by Olivia Harris, Cambridge University.
GloBIAS @globias.bsky.social Global BioImage Analysts’ Society, a registered non-profit association. Join us to shape BioImage Analysis on a global level. www.globias.org
Constantin Pape @cppape.bsky.social Group leader @ Uni Göttingen for Computational Cell Analytics and @ MPINAT for Machine Intelligence in the Life Sciences. AI for biology and medicine with a focus on microscopy.
https://user.informatik.uni-goettingen.de/~pape41/
Juan Nunez-Iglesias @jni.fosstodon.org.ap.brid.gy Core dev and co-founder napari.org
Core dev scikit-image.org
Co-author elegant-scipy.org
Research Fellow at https://www.monash.edu/researchinfrastructure/eresearch […]
[bridged from https://fosstodon.org/@jni on the fediverse by https://fed.brid.gy/ ]
Marvin Albert @m-albert.bsky.social Image Analysis and Data Management at the Department of Biosystems Science and Engineering of ETH Zürich in Basel
Kevin Yamauchi @kevinyamauchi.bsky.social building open source image analysis software for science
🔬 co-founder and member of @image.coop
🏝️ core developer @napari.org
https://kevinyamauchi.github.io/
Martin Weigert @maweigert.bsky.social Machine Learning for Microscopy | Prof @ TU Dresden | https://scholar.google.com/citations?user=ZltxyqoAAAAJ 
Romain Guiet @romainguiet.bsky.social BioImage Analyst @BIOP @EPFL
Tim-Oliver Buchholz @tibuch.bsky.social Data Scientist at Novartis | bio-image analyst | he/him
Norman Rzepka @normanrz.com Co-Founder of scalable minds. Building WEBKNOSSOS, a tool visualizing, annotation, managing and sharing of large 3D images. Contributing to OME-Zarr.
he/him @normanrz@mastodon.social
David Stansby @dstansby.bsky.social Research Software Engineer in bioimaging // I run the Human Organ Atlas (@humanorganatlas.bsky.social) // cyclist // walker
@lorenzocerrone.bsky.social @lorenzocerrone.bsky.social 
Josh Moore @joshmoore.bsky.social Standardizing open bioimaging data infrastructure
Technical Director – @gerbi-gmb.de
Member & Co-Founder – @image.coop
TA1 Lead – @nfdi4bioimage.bsky.social
#OSS Maintainer for @openmicroscopy.org and @zarr.dev
Marc Robinson-Rechavi @marcrr.bsky.social He/Him. Evolution and Bioinformatics. Posts mine alone, in English (mostly) & French. Chair of @dee-unil.bsky.social, Prof at @fbm-unil.bsky.social, group leader at @sib.swiss. PI of @bgee.org
🦣 Main account: https://ecoevo.social/@marcrr- C Charlotte Soneson @csoneson.bsky.social
Julien Roux @julienroux.bsky.social Bioinformatician, Department of Biomedicine @ Uni Basel & Swiss Institute of Bioinformatics
Interested in bulk and single-cell omics, data analysis, experimental design, data visualization, R/Bioc, open science, EDI, etc 🧬 🖥️
Will Macnair @willmacnair.bsky.social Amateur neuroscientist, quite a bit of experience in single cell analysis, working on #neurodegeneration in Basel. Formerly postdoc with @markrobinsonca.bsky.social at UZH.
Sean Davis @seandavi.bsky.social 
Wolfgang Huber @wkhuber.bsky.social Computational Biology and Statistics
Spatial Omics, Precision Oncology
R, Bioconductor, Open Science
https://www.huber.embl.de
Textbook: Modern Statistics for Modern Biology
https://www.huber.embl.de/msmb/ (with @sherlockpholmes.bsky.social)
Stephanie Hicks @stephaniehicks.bsky.social Associate Professor of Biostatistics and Biomedical Engineering at Johns Hopkins. stephaniehicks.com
Itai Yanai @itaiyanai.bsky.social Professor at the NYU School of Medicine (https://yanailab.org/). Co-founder and Director of the Night Science Institute (https://night-science.org/). Co-host of the 'Night Science Podcast' https://podcasts.apple.com/us/podcast/night-science/id1563415749
Rob Patro @robp.bsky.social Professor of CS @ University of Maryland. Proud Rust advocate! I ♥ science & compiled, statically-typed programming languages! Views are my own. Tech stack: https://github.com/rob-p/tech-stack.
Rafael Irizarry @rafalab.bsky.social Applied statistician. I tweet data-driven observations, data science educational materials, academic research updates, and the occasional joke.
Erik van Nimwegen @erikvannimwegen.bsky.social Gene regulatory networks and genome evolution. How do single cells make up their minds?
@NimwegenLab@mstdn.science
@NimwegenLab on twitter. Sorry X.
Ming Tommy Tang @tommytang.bsky.social Director of bioinformatics at AstraZeneca. On my way to helping 1 million people learn bioinformatics. Educator, Biotech, single cell. Also talks about leadership.
Grab my new book https://divingintogeneticsandgenomics.kit.com/wtdt_bioinformatics
Dr. Jean Fan @jef.works Associate prof comp biologist @JHUBME. Founder @cuSTEMized. Editor @PLOSCompBiol. Alum @HarvardDBMI @blairmagnet. Doing art like a science, science like an art.
Kelly Street @kstreet.bsky.social Assistant Professor in Biostatistics at USC. Interested in computational tools for single-cell genomics, esp. R/Bioconductor. Teaching a lot of cool stuff related to Health Data Science.
he/him
Saez-Rodriguez Group @saezlab.bsky.social Account of the Saez-Rodriguez lab at EMBL-EBI and Heidelberg University. We integrate #omics data with mechanistic molecular knowledge into #opensource #ML methods
Website: https://saezlab.org/
GitHub: https://github.com/saezlab/
Federico Marini @federicomarini.bsky.social Head of the Bioinformatics Group at the Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI) @UnimedizinMainz
🇮🇹 in 🇩🇪, father of three, loves 💻🧬🩸☀️🍹🌲🏖️ and saying "it depends". He/him
https://federicomarini.github.io
Helena Lucia Crowell @helucro.bsky.social Greek/American/German-ish in Spain.
Now PD in Barcelona. Prev PhD in Zurich.
community > monopolies. passion > prestige. creativity > recipes. analog > digital. music > all.
Luke Zappia @lazappi.bsky.social Bioinformatician, data scientist, software developer
Also @_lazappi_ and @lazappi@mastodon.au
Michael Love @mikelove.bsky.social Genetics, bioinformatics, comp bio, statistics, data science, open source, open science!
Valentina Boeva @valboeva.bsky.social Computational Cancer Genomics Group
Kieran Campbell @kieranrcampbell.bsky.social https://www.camlab.ca | ML for cancer genomics + single-cell and spatial computational methods | Toronto Canada 🖥️🧬
Lukas Weber @lmweber.bsky.social Assistant Professor of Biostatistics, Boston University. Statistical genomics, genomic data science, open science, R programming https://lmweber.org/
Valentine Svensson @nxn.se Molecular cell biology and stats / ML, mostly scRNA-seq.
Principal Scientist at Tahoe Tx.
https://www.nxn.se/archive
Dominic Grün @dominicgrun.bsky.social Quantitative Single-Cell Biology
Prof at Würzburg Institute of Systems Immunology (WüSI)
Stefano Mangiola @stemang.bsky.social Computational cancer-immunology and tumour microenvironment
@SAiGENCI and @WEHI_research, VCA fellow @VicGovDH
Constantin Ahlmann-Eltze @const-ae.bsky.social Scientist at Isomorphic Labs. Previously at UCL and EMBL working with Wolfgang Huber. Biology, ML, Python, R, cancer immunology
Kasper D Hansen @kasperdhansen.bsky.social Professor @ JHU, statistical genomics, www.hansenlab.org
Johannes Rainer @jorainer.bsky.social Computational Metabolomics, Open Software Development, Open and Reproducible Research, R, Emacs, Bioconductor, Mountains; also on https://fediscience.org/@jorainer
Shila Ghazanfar @shazanfar.bsky.social 
Davide Risso @davi1893.bsky.social 
Davis McCarthy @davisjmcc.bsky.social Head, Bioinformatics and Cellular Genomics Lab,
St Vincent's Institute of Medical Research, Melbourne. Stats, AI/ML, bioinformatics, genomics, single-cell.
https://www.svi.edu.au/researchers/dr-davis-mccarthy/
Henrik Bengtsson @henrikbengtsson.bsky.social CS/Math Stat/UCSF Assoc Prof
R Foundation/R Consortium
https://futureverse.org, https://mastodon.social/@henrikbengtsson
#RStats
🇲🇽 Leonardo Collado-Torres @lcolladotor.bsky.social #RStats @Bioconductor.bsky.social/🧠 genomics @lieberinstitute.bsky.social + Asst. Prof. @jhubiostat.bsky.social/@lcgunam @jtleek.bsky.social @aejaffe.bsky.social alumni/ @libdrstats.bsky.social @CDSBMexico.bsky.social
http://lcolladotor.github.io
Matt Ritchie @mritchieau.bsky.social Lab Head in #bioinformatics developing #opensource #rstats #bioconductor packages for #singlecell #nanopore #rnaseq analysis, Melbourne, AU
Software & data: https://mritchielab.github.io
LinkedIn: https://www.linkedin.com/in/matthew-ritchie-5a468880
Luciano Martelotto @lgmartelotto.bsky.social Sc/St-Omics pro-aficionado. Knowledge sharing is my thing. Views, opinions and comments are my own and do not represent those of my employer. Like/Share ≠ endorse
Favorite quote: “Be curious, not judgmental”
Thomas Ashhurst @thomasash.bsky.social Senior Scientist @ The University of Sydney: cytometry, CyTOF, single-cell & spatial multiomics, systems immunology. Interests in respiratory 🫁 & neurological 🧠 infectious disease 🦠, paediatric immunology 👶.
https://tomashhurst.github.io