Samuel Lampa

@smllmp.bsky.social

975 Followers 680 Following

Fascinated by Living Systems | Clin Micro Bioinfo @ Karolinska | PhD http://pharmb.io | Reproducibility, #SciWorkflows | Curious: Genomic Algos, TEs etc R&D: livesys.se Thinking: https://livingsystems.substack.com Married. Dad. Sinner saved by grace.

Example report from SciCommander, showing executed commands and a graph of commands and files produced.

Screenshot showing that 460 slots out of 1000 for the upcoming first course session on 5 June 2026 at 9:00-12:30 PM CET are already booked.

Title image for the ECDC course: GenEpi-BioTrain - Virtual Training 27 - Clinical application of Nanopore-based 16S metagenomic sequencing for diagnostics

Screenshot showing a terminal editor with two panes, with Rust code to the left and the corresponding Mojo code to the right.

Screenshot showing the output of parts of a .sam file, with the CIGAR column colored according to modification type.

The book "Genome-Scale Algorithm Design" Second Edition by Veli Mäkinen et al, laying on a desk.

Screenshot from ChatGPT with me asking "Can you produce a nice compact ASCII art of the word SciCommander", and ChatGPT responding with an ASCII art saying ShiExpecker.

Screenshot of the sandbox.bio playground for running a linux environment in the browser

A screenshot of the certificate of Samuel having finished the 6 course "Genomic Data Science" Coursera specialization by Johns Hopkins University.