Utz Ermel

@uermel.bsky.social

419 Followers 751 Following

Scientist at bi[o]hub, Redwood City, CA I like to make open source cryoET things.

A figure showing an example prompt and the generated script.
A diagram showing the full copick workflow, from obtaining data from the cryoET portal to deposition of new or curated annotations.
The ChimeraX-copick interface showing a tomogram from cryoET data portal Dataset 10456: https://cryoetdataportal.czscience.com/datasets/10456
A screenshot of a dataset page on the cryoET data portal with the metadata panel opened and the View All Info button highlighted.
Four representative slices of cryo-tomograms showing annotated organelles.
A 4-panel image showing tomographic slices and annotations from CZII's object detection challenge.
A short clip showing 4-panel images of tomographic slices with the predictions of the 10 winning teams of CZII's particle picking challenge