Léonard Dubois @leonardubois.bsky.social Microbiome computational scientist
PhD in Trento 🇮🇹 postdoc in Paris 🇫🇷 now in Tokyo 🇯🇵
Yvann Bourigault @yvannbglt.bsky.social Associate Professor at LBCM, Universite Bretagne Sud• PhD in Microbiology • former CBSA Lab and LalouxLab
Working on biofilms, bacterial interactions, biocontrol and predatory bacteria
Flora Gaudillière-Jami @fgaudilliere.bsky.social Biologist. Transposable elements and bacterial evolution. Soon-to-be postdoc in Eduardo Rocha’s team at Institut Pasteur.
Meriem Youssef @meriemyssf.bsky.social 
Institut DataIA Paris-Saclay @dataiainstitute.bsky.social Institut de recherche en #IA, #DataScience & leurs applications, associé à l'Université Paris-Saclay 🎓🇫🇷
Xavier Charpentier @labxc.bsky.social Group leader.
HGT in bacterial pathogens. Acinetobacter, Legionella. Natural transformation. AMR. MGEs.
Centre International de Recherche en Infectiologie
Aniket Saraf @aniketsaraf.bsky.social Postdoctoral Researcher at Institut Pasteur | Cyanobacterial taxonomist and systematist 🔬🧬| Cricket 🏏 enthusiast
https://scholar.google.com/citations?user=TBcWeeMAAAAJ&hl=en
Computational Biology Dpt at Pasteur @pasteur-dbc.bsky.social A multidisciplinary community of researchers dedicated to better understanding complex biological mechanisms and systems, from bacteria to human
Société Française de BioInformatique @handle.invalid https://www.sfbi.fr/
GIS IBiSA @ibisa.net Infrastructures en biologie, santé et agronomie
BlueRemediomics @blueremediomics.bsky.social Horizon Europe project harnessing the marine microbiome. Grant Agreement 101082304. Additional funding SERI: 22.00384 & UKRI: IFS 10061678; 10055633; 10057167.
Florian Tesson @ftesson.bsky.social Postdoctoral Fellow in @floravincent.bsky.social's lab at @embl.org
Formerly in @mdmlab.bsky.social
INRAE Migale @inrae-migale.bsky.social Migale is a French Bioinformatics Facilty from
@inrae-france.bsky.social
BioinfOmics INRAE @bioinfomics.bsky.social French Research Infrastructure in Bioinformatics from @inrae-france.bsky.social
https://bioinfomics.inrae.fr
Yann Dussert @yanndussert.bsky.social Population & comparative genomics, evolutionary biology & adaptation / Researcher at CEA Genoscope / ORCID: 0000-0003-1900-7715
Google Scholar: https://scholar.google.com/citations?user=1bs5bs4AAAAJ&hl=fr
@adrienthurotte.bsky.social @adrienthurotte.bsky.social 
UMR Génomique Métabolique @genoscopeumr.bsky.social Unit research of Genoscope (CEA, Univ Evry Paris Saclay, CNRS). Axes of research :
Environmental genomic & metagenomic
Exploration & exploitation of microorganism metabolism
Synthetic biology & xenobiology
Systems biology
IFB/ELIXIR-Fr @ifb-elixir-fr.bsky.social Institut Français de Bioinformatique (IFB) et noeud français d'ELIXIR Europe
IFB is the national #bioinformatics infrastructure for #lifesciences communities and the French node of @elixir-europe.org
💻 https://www.ifb-elixir.fr/
PhageLCB @phagelcb.bsky.social Phage Group @ Laboratoire de Chimie Bactérienne
#phage genomics, #phage-host interactions, #phage-host coevolution
Unité INRAE MaIAGE @inrae-maiage.bsky.social Unité Mathématique et informatique appliquées du génome à l’environnement (MaIAGE – UR INRAE)
@j-main-guy.bsky.social @j-main-guy.bsky.social 
@afelten.bsky.social @afelten.bsky.social 
@guilhemroyer.bsky.social @guilhemroyer.bsky.social 
Université Paris-Saclay @univparissaclay.bsky.social Compte officiel de l'Université Paris-Saclay : 48 000 étudiants, 9 000 chercheurs et enseignants-chercheurs, 4 600 doctorants #Formation #Recherche
@i2bcparissaclay.bsky.social @i2bcparissaclay.bsky.social 
Jérôme Arnoux @jpjarnoux.bsky.social
PhD in Bioinformatics | Postdoc @icelabumu.bsky.social
Using AI/ML to discover new antibiotics against resistant bacteria 🦠
#AMR #RNAseq #AI #MachineLearning #DeepLearning | Previously: #pangenomic #metagenomics #metabolism
Karel Břinda @brinda.eu ‖ Permanent Researcher / INRIA Start. Faculty @ INRIA Rennes 🇫🇷 ‖
BioInfo/CompBio: algorithms, genomics, pathogens & rapid diagnostic of antibiotic resistance《 https://brinda.eu | https://github.com/karel-brinda 》
France Génomique @fr-genomics.bsky.social The FRANCE GENOMIQUE infrastructure brings together the capacities and expertise of the main French genomic and bioinformatics platforms.
Guy Perrière @komo625.bsky.social CNRS research director, bioinformatician specialized in molecular evolution and phylogenetics. Music lover (post-punk, new wave, cold wave, dream pop and shoegaze). Personal account. Posts in French and in English, mostly about music.
JOBIM 2025 @jobim2025.bsky.social Journées ouvertes en Biologie, Informatique et Mathématiques | Juillet 8-11 | @Bordeaux
🌐 https://jobim2025.labri.fr/
🔗 https://linktr.ee/JOBIM2025
Hélène Chiapello @helenechiapello.bsky.social Bioinformatics. Microbiology. Training. Open Science. INRAE and IFB
PCI Microbiol @pci-microbiol.bsky.social A community of microbiologists taking peer-review to the next level. We form a free, supra-journal platform that reviews&recommends pre-prints in microbiology
mixlamalice @mixlamalice.bsky.social Grouillot de l'#ESR jusqu'en 2023, désormais sergent-chef sans carotte ni bâton. A part ça, papa, gastronome, hardos et comique troupier. 
Bérénice Batut @bebatut.bsky.social She/her. Bioinformatics. Microbiome 🦠. Open Science. Training. Mentoring. Galaxy. OLS. ELIXIR Microbiome Community. Mother
Pierre Poulain @pierrepo.bsky.social Associate prof Univ Paris Cité & Laboratory of Theoretical Biochemistry
#bioinformatics #python #unix
#openscience Software Heritage ambassador
#pedagogy 
𝖳𝗁𝖾𝖬𝖾𝗍𝖺𝖭𝖾𝗐𝗌 @themeta.news La science. Le monde (et inversement)
Inscrivez-vous ! themeta.news/inscription
BacDive @bacdive.bsky.social BacDive is the worldwide largest database for strain-level bacterial and archaeal information. Our mission is to mobilize, standardize, and integrate research data from diverse sources and make it freely accessible.
bacdive.dsmz.de
INRAE_France @inrae-france.bsky.social Bienvenue sur le compte d'INRAE
Institut national de recherche pour l’agriculture, l’alimentation et l’environnement
CNRS @cnrs.fr Organisme public 🇫🇷 de recherche pluridisciplinaire, le Centre national de la recherche scientifique c'est 33 000 personnes qui font avancer la connaissance. #HelloESR
Vincent Libis @vincent-libis.bsky.social Research group leader @INSERM Paris
https://www.elis-labs.org/libis/
Synbio - microbial natural products - drug discovery 
Dan Udwary @danudwary.secondarymetabolism.com Natural products biosynthesis and computational biologist at JGI. Host of http://naturalprodcast.com This is my personal account, not my employer's, and things I say or re-post are not representative of them, and maybe not even me.
DEEMteam_Orsay @deemteam.bsky.social Diversity, Ecology and Evolution of Microbes (DEEM) team. Posts by David Moreira. #treeoflife #evolution
Paris, France
https://www.deemteam.fr/en/
Frédérique Le Roux @fredoleroux.bsky.social Professeure/chaire d'excellence du Canada
Université de Montréal
Département de microbiologie, infectiologie et immunologie
What do I like? Wild things 😜 yet phages are my favorite!
Sorek Lab @soreklab.bsky.social The Sorek Lab
Weizmann Institute of Science, Israel
https://www.weizmann.ac.il/molgen/Sorek/
Ákos T Kovács @evolvedbiofilm.bsky.social Professor of Microbiome Ecology at Institute of Biology, Leiden University
Bacillus subtilis, biofilms, plant microbiome, bacteria-fungi interactions and circadian clock within @microclockerc.bsky.social #ERCSyG
https://linktr.ee/atkovacs
Joint Genome Institute @jgi.doe.gov We are a DOE User Facility providing access to integrative genome science capabilities. Located at Berkeley Lab. Work with us: http://jointgeno.me/proposals_B
@bvbrc.bsky.social @bvbrc.bsky.social 
MDM lab @mdmlab.bsky.social Molecular Diversity of Microbes Lab at Institut Pasteur
Focusing on bacterial immunity 🦠🧬🧫 //
We ♥️ sharing our science with everyone // PI Aude Bernheim
Stefania Dumbrava @sdumbrava.bsky.social 
Aude Bernheim @audeber.bsky.social PI at Institut Pasteur
Evolution, immunity, genomics, microbiolgy.
Into immunity in bacteria and its conservation in eukaryotes.
Advocate for more inclusive sciences
https://mdmlab.fr/
Thijs J. G. Ettema 🦠🔬🇳🇱🇸🇪🇪🇺 @ettema.bsky.social Professor of Microbiology @ WUR 🇳🇱 | Evolutionary microbiology | Exploring the Tree of Life | Archaea aficionado | Symbiotic interactions | husband, father, cat-person, eternal house renovator, secretly a Jedi knight
Institut Pasteur | 130 years of biomedical research @pasteur.fr 👩🔬 The Institut Pasteur is a leading global biomedical research institute.
🔬 Explore with us the frontiers of biomedical research
🧪 Follow us to uncover groundbreaking discoveries
🌍 Join a community passionate about progress and open science
The Probst Lab @probstlab.bsky.social Group for Microbial Systems Ecology, led by @alexjprobst.bsky.social
Microbial, viral, & geochemical interactions by linking meta'omics & microscopy
Managed by @geomicrosoares.bsky.social
Willem van Schaik @wvschaik.bsky.social Microbiology, microbiome, antimicrobial resistance. Sometimes UK politics. Head of Research of the School of Infection, Inflammation and Immunology, University of Birmingham. Also Co-Director of @target-amr.bsky.social.
Simonetta Gribaldo @sgribaldo.bsky.social Evolutionary microbiologist. Head of lab at Institut Pasteur, Paris. Microbial diversity and evolution. Phylogenomics, Tree of Life, Envelopes, Methanogens.
https://research.pasteur.fr/en/team/evolutionary-biology-of-the-microbial-cell/
FEMS @femsmicro.org Federation of European Microbiological Societies | https://femsmicro.start.page | Follow the not-for-profit FEMS Journals: @femsjournals.bsky.social | #microbiology | Growing microbial futures at FEMS MICRO Ljubljana 2027: femsmicro.org
Loïs Maignien, PhD. @loimai.bsky.social PI Microbial Ecogenomics Group at Brest Univ. 🇫🇷
https://maignienlab.github.io/
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social 
bioRxiv Genomics @biorxiv-genomic.bsky.social 
Laurent Jacob @laurentjacob.bsky.social Researcher in statistics and machine learning for genomics
https://laurent-jacob.github.io/
Didier Mazel @amazeld.bsky.social Bacterial geneticist, Prof @ Institut Pasteur.
ace-gtdb.bsky.social @ace-gtdb.bsky.social Genome Taxonomy Database (GTDB; https://gtdb.ecogenomic.org) is an initiative to establish a standardised microbial taxonomy based on genome phylogeny.
InterPro @interprodb.bsky.social InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites.
ebi.ac.uk/interpro/
@mgnifydb.bsky.social @mgnifydb.bsky.social 
@jlpernodet.bsky.social @jlpernodet.bsky.social 
Marnix Medema @marnixmedema.bsky.social Professor of Bioinformatics at Wageningen University and Leiden University. Natural product discovery, microbiomes, method development.
Cameron Thrash @jcamthrash.bsky.social Professor, USC Marine and Environmental Biology, microbe hunter. Dad, husband. he/him. Not a bot. thethrashlab.com @the.thrash.lab
Victor de Lorenzo (CNB, Madrid) @vdlorenzo.bsky.social Synthetic Biology with a Southern European flavour for a new partnership with the Living World https://vdl-lab.com/ http://seva-plasmids.com/
One Codex @onecodex.bsky.social onecodex.com - A fast, easy-to-use platform for microbiome sequencing and analysis
Christophe Dessimoz @dessimoz.bsky.social Executive Director of SIB Swiss Institute of Bioinformatics @sib.swiss and Professor at the University of Lausanne (UNIL), Switzerland. @cdessimoz and @dessimoz@mstdn.science elsewhere. Comparative Genomics, Phylogenetics, Evolution, Computational Biology.
James McInerney @jomcinerney.bsky.social Writing a book about horizontal gene transfer and non treelike evolution. Bioinformatics, Evolutionary Biology. Pangenomes. https://profmcinerney.substack.com/ 🇮🇪 https://mol-evol.github.io/
Ewan Birney @ewanbirney.bsky.social Director of EMBL-EBI. I have an insatiable love of biology. Consultant to ONT and Cantata (Dovetail)
@graphia.app @graphia.app Graphia is a powerful open source visual analytics application developed to aid the interpretation of large and complex datasets.
https://graphia.app
Peer Community In @peercommunityin.bsky.social A free recommendation process of scientific preprints based on peer reviews: https://peercommunityin.org
A multi-disciplinary diamond open-access journal: https://peercommunityjournal.org @peercomjournal.bsky.social
Elisabeth Bik @elisabethbik.bsky.social Science integrity consultant and crowdfunded volunteer, PhD.
Ex-Stanford University. Maddox Prize/Einstein F Award winner
NL/USA/SFO.
#ImageForensics
@MicrobiomDigest on X.
Blog: ScienceIntegrityDigest.com
Support me: https://www.patreon.com/elisabethbik
Segata Lab @cibiocm.bsky.social The Laboratory of Computational Metagenomics led by Nicola Segata
**We are hiring, get in touch if interested!**
http://segatalab.cibio.unitn.it/
Moderator @svetlanaup.bsky.social
Jonathan Eisen @phylogenomics.bsky.social Professor at UC Davis
Work: phylogenomics & microbiomes; wildlife and aquatic microbiology; #openscience;
Other: #birds; baseball; T1D
Lab phylogenomics.me
Pics jonathaneisen.smugmug.com
Links linktr.ee/jonathaneisen
TED go.ted.com/6WPm
Genopole @genopole.bsky.social Genopole shapes and vivifies a research hub for genomics and life sciences, energizes the growth of biotechnologies by creating, accompanying and welcoming innovative businesses, strengthens a life sciences academic center, and organizes lively scientific 
Eric Pelletier @ericpelletier.bsky.social 
Ouvrir la science @ouvrirlascience.bsky.social Le Comité pour la science ouverte assure la gouvernance et la la mise en œuvre coordonnée du Plan national pour la science ouverte en France
Tom Delmont @tomdelmont.bsky.social Marine microbial ecologist and evolutionary biologist
Torsten Seemann @torstenseemann.bsky.social Professor @ University of Melbourne, Australia
Microbial bioinformatics, genomics, software, clinical and public health microbiology
https://tseemann.github.io
A. Murat Eren (Meren) @merenbey.bsky.social Professor of Ecosystem Data Science at @hifmb.bsky.social studying the ecology and evolution of microbes through high-resolution 'omics and #anvio
David Vallenet @vallenet.bsky.social Researcher at LABGeM, Genoscope
@genolabgem.bsky.social in bioinformatics, genomics, metabolic networks
Kai Blin @kblin.bsky.social Microbiology PhD, co-author of antiSMASH, Open Source geek, views are my own. @kblin@scholar.social
bioRxiv Microbiology @biorxiv-microbiol.bsky.social 
sylvain Brisse @sylvainbrisse.bsky.social professor at Institut Pasteur. Bacterial genomics, vaccine-preventable diseases, antimicrobial resistance, bioinformatics and public heath applications. International capacity building and teaching. Klebsiella diphtheria whooping cough genomic librairies
Sophie Abby @soabby.bsky.social Researcher at CNRS, TIMC lab, Grenoble France
compBio@TrEE group https://tree-timc.github.io/compbio
Archaea & Bacteria Evolution
Comparative genomics and Phylogenomics
Evolution of Cellular machineries & Metabolic pathways
https://sophieabby.github.io
Genomes & Genetics @gengenip.bsky.social Exploring the genomes of bacteria, yeast, and humans @InstitutPasteur to shed new lights on their genetics, function, and evolution.
https://research.pasteur.fr/fr/department/genomes-genetics/
Simon Roux @simrouxvirus.bsky.social Virus-obsessed bioinformatician, DOE JGI Scientist, Enjoy exploring the viral world with #metagenomics and other cool #omics toys. He/him. Opinions my own. 
Téo Lemane @tlemane.bsky.social 
Rayan Chikhi @rayanchikhi.bsky.social 
Camille Marchet ⚡ @camillemrcht.bsky.social Researcher in @BonsaiSeqBioinfo
Lille, France. Bioinformatics, data-structures & DNA/RNA.
Sophie Schbath @sophieschbath.bsky.social Researcher at INRAE MaIAGE lab #statistics #bioinformatics, scientific head of MIGALE bioinformatics facility, concerned about environmental impacts of our activites
Francois Sabot @francoissabot.bsky.social Scientist, biologist, #evolution and #pangenomics, #bioinformatics, #AI and #OpenScience @ird_fr - and a little bit a #geek too
mastodon: @francois_sabot@genomic.social
Guillaume GAUTREAU @guigau.bsky.social PhD in #CompBio. (Meta/Pan)genomics. Health Law. GDPR compliance.
http://orcid.org/0000-0002-0970…
INRAE scientist at MaIAGE.
Valentin Loux @vloux.bsky.social Bioinformatics at @inrae-france.bsky.social
Head of @inrae-migale.bsky.social
Zamin Iqbal @zaminiqbal.bsky.social Professor of Algorithmic and Microbial Genomics at the University of Bath (UK). Pangenomes, drug resistance (esp TB), data structures for DNA search, plasmid evolution, global microbial surveillance. Open Data, reproducibility. https://zam-iqbal-lab.org/