#SingleCell preprints @prepub-singlecell.bsky.social feeds: biorxiv, medrxiv, arxiv.q-bio, arxiv.cs, arxiv.math, Research Square
regex: '(single(- )(cell|nuclei)|s[cn]RNA-seq)'
If you have suggestions, please get in contact with @willmacnair :)
Eszter Lakatos @eszterlakatos.bsky.social Computational biologist fascinated by (cancer) genomes. Cyclist, climber and amateur singer on the side. Assistant Prof at Chalmers.
Genome Research @genomeresearch.bsky.social A leading peer-reviewed genomics journal. https://genome.cshlp.org
Submit: http://submit.genome.org
Mike Morgan @mdmorgan.bsky.social Lecturer (assistant professor) University of Aberdeen. Immunology, computational biology, genetics and single cells. Runner, climber and connoisseur of Yorkshire tea. Views expressed are my own. https://www.morganlab.co.uk/
Francesca Finotello 🖥️🧬 @francescafinotello.bsky.social Assistant Professor leading the Computational Biomedicine Group at the University of Innsbruck • Data scientist at the Digital Science Center (DiSC) • Precision medicine and cancer immunotherapy • Mother 🧬🖥️
https://computationalbiomedicinegroup.github.io/
Kelly Street @kstreet.bsky.social Assistant Professor in Biostatistics at USC. Interested in computational tools for single-cell genomics, esp. R/Bioconductor. Teaching a lot of cool stuff related to Health Data Science.
he/him
Samuel Marsh Ph.D. @samuelmarsh.bsky.social Postdoc Beth Stevens Lab | Interested in Alzheimer’s disease, all things single cell, and neuroimmune | Dad 👧👶🏻 | #scicomm #rstats | NEU ‘10 & UCI ’16
https://samuel-marsh.science- J @julienbryois.bsky.social @julienbryois.bsky.social Senior scientist leveraging human genetics and single cell genomics for drug discovery
Clarence Mah @clarencemah.me CompBio Scientist, PhD • #spatialomics, #rnabiology, #opensource • Chinese-Malay American
🍱 Creator of github.com/ckmah/bento-tools
⭐️ clarencemah.me
Ashley Maynard @ashleymaynard.bsky.social Group Leader (ELISIR) at EPFL BMI - https://www.epfl.ch/labs/gr-maynard/
Previously ETH Zurich in Treutlein lab and CZ Biohub - working to understand complex biology a single cell at a time
Mikaela Koutrouli @mkoutrouli.bsky.social Computing all things single-cell | Postdoc at Genentech @MarioniLab | Steering council at scverse.org
Gregor Sturm @grst.bsky.social Single Cell/Spatial. Cancer Immunology. Outdoor activities.
Core developer @scverse.bsky.social.
Working in Clinical Bioinformatics at Boehringer Ingelheim.
Formerly PhD student at Medical University of Innsbruck.
My private account.
github.com/grst
Thomas Ashhurst @thomasash.bsky.social Senior Scientist @ The University of Sydney: cytometry, CyTOF, single-cell & spatial multiomics, systems immunology. Interests in respiratory 🫁 & neurological 🧠 infectious disease 🦠, paediatric immunology 👶.
https://tomashhurst.github.io
Chris McGinnis @cmcginnis.bsky.social Cancer immunology, metastasis, TME, single-cell genomics | Postdoc Satpathy Lab Stanford | PhD Gartner Lab UCSF
Joris van de Haar, MD, PhD @joris-vd-haar.bsky.social Clinician-scientist / precision medicine / cancer immunology / bioinformatics / MD, PhD
@Netherlands Cancer Institute / ESMO precision medicine working group
Trying to have fun discovering stuff to help patients.
Opinions are my own.
Marcos Malumbres @mmalumbres.bsky.social Cancer cell biologist at ICREA, @vhio.bsky.social, @irbbarcelona.org & visiting @danafarber.bsky.social. Collaborating with AECC, SOLTI, FERO and @ASEICA.bsky.social. Love all arts, from python to books, music and painting. malumbreslab.org
Rohit Singh @rohitsingh8080.bsky.social Computational biologist. Faculty @DukeU. Co-founder http://martini.ai. Prev @MIT_CSAIL. Did quant investing for a while, before returning to research.
https://singhlab.net
bioRxiv Genomics @biorxiv-genomic.bsky.social 
Will Macnair @willmacnair.bsky.social Amateur neuroscientist, quite a bit of experience in single cell analysis, working on #neurodegeneration in Basel. Formerly postdoc with @markrobinsonca.bsky.social at UZH.
Michael Hoffman @michaelhoffman.bsky.social Chair, Computational BIology and Medicine Program, Princess Margaret Cancer Centre, University Health Network.
Associate Professor, Medical Biophysics, University of Toronto.
Disclosures: https://github.com/michaelmhoffman/disclosure/
Adam Gayoso @adamgayoso.bsky.social Machine learning and biology. Research Scientist at Google DeepMind. adamgayoso.github.io. Views are my own.
Moritz Gerstung @moritzgerstung.bsky.social Scientist developing AI for oncology. Division head at the German Cancer Research Centre DKFZ. Prof at the University of Heidelberg, Germany. Previously at EMBL-EBI and Wellcome Sanger Institute. Alumnus of ETH Zurich.
Stein Aerts @steinaerts.bsky.social Computational biologist interested in deciphering the genomic regulatory code at vib.ai
Alex Tong @alextong.bsky.social ML + Cells + Proteins. PI @ AITHYRA https://alextong.net
Recursion @recursionpharma.bsky.social Decoding biology to radically improve lives. The industrial revolution of drug discovery is here. Learn more at recursion.com #techbio
Can Ergen @canergen.bsky.social single-cell genomics, spatial transcriptomics, T cell immunology, IBD
Rémi Trimbour - MD-PhD student @remitrimbour.bsky.social MD-PhD student, computational biology / single-cell omics
Currently at
@cantinilab.bsky.social - Institut Pasteur & @saezlab.bsky.social - Heidelberg Uni
Tools: https://www.github.com/r-trimbour
Publications: https://tinyurl.com/TrimbourRemi
Clément Weinreich @clement-wh.bsky.social PhD student in ML for Genomics at Institut Pasteur
Website: https://clement-w.github.io
Yanay Rosen @yanayrosen.bsky.social CS PhD Student at Stanford. Machine Learning + CompBio
Website: http://yanay.ai
JURA Bio, Inc. @jura.bsky.social Full-stack machine learning and synthetic biology company dedicated to transforming personalized, immune-mediated medicine
Ajit Johnson Nirmal @ajitjohnson.com Assistant Professor @harvard • Tumor Microenvironment | Spatial Biology | Computational | Multimodal Data Integration • PI at @nirmallab.com
Tim Straub @timothystraub.com Senior Data Scientist @ Tiny Health
Data science | bioinformatics| computational biology
Broadly interested in NGS and multi-omics, microbiome, infectious disease, ML/AI, cool science, and big data. Also golden retrievers.
All views are my own.
Jeremie Kalfon 👨💻🧬🤖🚀 @jkobject.com Doing a Ph.D. AI in Bio. | Ex @WhiteLabGx @BroadInstitute @MIT | Built @PiPleteam | ML, Cancer, Genomics, Data Sci, Entrepreneur, FullStack Dev | All views are mine
Patrick Mineault @patrickmineault.bsky.social NeuroAI, vision, open science. NeuroAI researcher at Amaranth Foundation. Previously engineer @ Google, Meta, Mila. Updates from http://neuroai.science
Francesca Grisoni @fragrisoni.bsky.social Associate Prof | AI for drug discovery | Eindhoven University of Technology | Previously ETH Zurich & UniMiB | she/her 🏳️🌈
Austin Tripp @austinjtripp.bsky.social (ML ∪ Bayesian optimization ∪ active learning) ∩ (drug discovery)
Researcher @valenceai.bsky.social
Details: austintripp.ca
Pat Walters @wpwalters.bsky.social Cheminformatics, ML, Drug Discovery
Kristina Ulicna @kristinaulicna.bsky.social AIxBio Research Scientist 👩🔬 | PhD Computational Biology 👩💻 | BSc Biomedicine 🧫 | "Singlecellologist" 🦠 into biologically meaningful representation learning 🧬 | Decoding life in London 🇬🇧
Nathan C. Frey @ncfrey.bsky.social Research at Anthropic. Prev CTO & Co-Founder at Coefficient Bio (acq.). Ex-Genentech. Advisor to Atomscale & Guide Labs
ncfrey.com | ncfrey.substack.com
Jason Hartford @jhartford.bsky.social DKO fellow (Assistant Prof equiv.) at University of Manchester. Causality Research Unit Lead at Valence Labs / Recursion Pharma. Prev: postdoc at Mila with Prof Yoshua Bengio, PhD at UBC. South African 🇿🇦
Tanmayee Narendra @tanmayee.bsky.social Postdoc in Computational Biology at University of Dundee, PhD from University of Tübingen and IMPRS-IS
My interests are epigenomics, chromatin biology, gene regulation, machine learning and causal inference
https://ntanmayee.github.io/
Raphael Gottardo @rgottardo.bsky.social Biomedical Data Science Center Director @CHUV. Professor at @UNIL and @EPFL. AI, ML, and statistical learning for high-dimensional (single-cell/spatial) data in clinical and translational medicine. Interdisciplinary scientist passionate about data.
Estella Yixing Dong @estellayixingdong.bsky.social Applied Machine Learning @Bayer | PhD @CHUVLausanne | Immunotherapy, Single-Cell RNAseq, Spatial Transcriptomics, Statistics and Machine Learning. 📷⛸️🏔️
Jieran Sun @onesinglecell.bsky.social I treat every #singleCell gently. | PhD in Comp Bio at CHUV, Lausanne #OpenScience #SpatialTranscriptomics
Susan Holmes🎲🖥️🧬 @sherlockpholmes.bsky.social Statistician,Mother,Prof,Grandmother(she/her)🇫🇷🇵🇹🇺🇸🧪.
🖋️with @wkhuber.bsky.social:Modern Statistics for Modern Biology (https://www.huber.embl.de/msmb/) #stats,#rstats,OSS,arXiv, microbial ecology,cytof,multi-omics,Bioconductor:phyloseq, DADA2
Stephanie Hicks @stephaniehicks.bsky.social Associate Professor of Biostatistics and Biomedical Engineering at Johns Hopkins. stephaniehicks.com
Michael Love @mikelove.bsky.social Genetics, bioinformatics, comp bio, statistics, data science, open source, open science!
Wolfgang Huber @wkhuber.bsky.social Computational Biology and Statistics
Spatial Omics, Precision Oncology
R, Bioconductor, Open Science
https://www.huber.embl.de
Textbook: Modern Statistics for Modern Biology
https://www.huber.embl.de/msmb/ (with @sherlockpholmes.bsky.social)
Lior Pachter @lpachter.bsky.social Bren Professor of Computational Biology @Caltech.edu. Blog at http://liorpachter.wordpress.com. Posts represent my views, not my employer's. #methodsmatter
Elana Fertig, PhD @fertiglab.bsky.social Inter-dimensional cancer biologist. Director of the @genomescience.bsky.social at @umbaltimore.bsky.social.
Jian Ma @jianma.bsky.social Ray and Stephanie Lane Professor of Computational Biology at CMU School of Computer Science. https://www.cs.cmu.edu/~jianma/
Quaid Morris @quaidmorris.bsky.social Computational biology, machine learning, AI, RNA, cancer genomics. My views are my own. https://www.morrislab.ai
He/him/his
Rob Patro @robp.bsky.social Professor of CS @ University of Maryland. Proud Rust advocate! I ♥ science & compiled, statically-typed programming languages! Views are my own. Tech stack: https://github.com/rob-p/tech-stack.
Nicolas Robine 🇪🇺🇫🇷🇺🇸 @nicorobine.bsky.social Artisanal Genomics since 2002. Mostly in English, sometimes in French. #NoPasaran
Tim Triche, Jr.🔰 @timtriche.bsky.social Executive panhandler, trichelab.vai.org
Posts may contain trace quantities of blood🩸, chromatin 🧬 & stats 🧮
https://scholar.google.com/citations?user=AOoIO74AAAAJ
Views expressed are my own (but for the right price they can be yours!)
Casey Greene @casey.greenelab.com Chair of the Department of Biomedical Informatics at the University of Colorado School of Medicine. Research: transcriptomics, machine learning, public data - pick two of three. He/him. Views mine, not employer's.
Alicia Oshlack @aliciao.bsky.social Bioinformatics and Computational Biology. Australia 
Rafael Irizarry @rafalab.bsky.social Applied statistician. I tweet data-driven observations, data science educational materials, academic research updates, and the occasional joke.
Ben Langmead @benlangmead.bsky.social Professor of Computer Science @ JHU. https://www.langmead-lab.org/ https://www.youtube.com/BenLangmead
@danapeer.bsky.social @danapeer.bsky.social 
Kieran Campbell @kieranrcampbell.bsky.social https://www.camlab.ca | ML for cancer genomics + single-cell and spatial computational methods | Toronto Canada 🖥️🧬
Greifflab @victorgreiff.bsky.social Professor of Computational and Systems Immunology @UniOslo.
Cofounder & Director of Computational Immunology @imprintlabs.bsky.social
Santiago Carmona 🧬 🖥️ 🧑🏾🔬 @carmonation.bsky.social Computational biologist, associate professor at University of Geneva, Department of Pathology and Immunology. Single-cell omics, bio data science, immunology & cancer research
Kasper D Hansen @kasperdhansen.bsky.social Professor @ JHU, statistical genomics, www.hansenlab.org
Su-In Lee @suinlee.bsky.social Boeing Endowed Professor in the Allen School of Computer Science & Engineering at the University of Washington. Interested in AI/ML, computational biology, and AI in medicine. https://suinlee.cs.washington.edu/
Dr. Jean Fan @jef.works Associate prof comp biologist @JHUBME. Founder @cuSTEMized. Editor @PLOSCompBiol. Alum @HarvardDBMI @blairmagnet. Doing art like a science, science like an art.
Atul Butte @atulbutte.bsky.social Chief Data Scientist U of CA Health・Director, Bakar Computational Health Sci Institute・Distinguished Prof af UCSF・Entrepreneur・He/him・Opinions ⇨ my own
John Tsang @tsanglab.bsky.social Systems immunologist at Yale, @yalecsei.bsky.social, @czbiohub.bsky.social
Me: https://medicine.yale.edu/profile/john-tsang/
Lab: https://www.tsanglab.org
Center: https://medicine.yale.edu/systems-engineering-immunology/
Gioele La Manno @gioelelamanno.bsky.social Professor at #EPFL - #RNAVelocity inventor - Laboratory of Brain Development and Biological Data Science. Single-cell and spatial biologist studying brain development and lipids. #ERCStg investigator
Lukas Weber @lmweber.bsky.social Assistant Professor of Biostatistics, Boston University. Statistical genomics, genomic data science, open science, R programming https://lmweber.org/
Steve Turner @sjturn.bsky.social Immunologist @MonashUni, Head of Dept Microbiology, Past President of @ASImmunology; Trying to work out how immunity works, in particular T cells #Tcellsarecool #immunosky
Marianna Rapsomaniki @marianna-raps.bsky.social Assistant Professor at the Biomedical Data Science Center at University of Lausanne (UNIL) and Lausanne University Hospital (CHUV). AI/ML for single-cell and spatial biology with a focus on oncology. 
Magnus Rattray @mrattray.bsky.social Professor of Computational & Systems Biology at University of Manchester. Applies machine learning and modelling to help understand the complexity of biology. idsai.manchester.ac.uk, https://www.ellismcr.org, @official-uom.bsky.social
Babak Alipanahi @babaka.bsky.social computational biology, artificial intelligence and large-scale datasets to improve human health
Julien Roux @julienroux.bsky.social Bioinformatician, Department of Biomedicine @ Uni Basel & Swiss Institute of Bioinformatics
Interested in bulk and single-cell omics, data analysis, experimental design, data visualization, R/Bioc, open science, EDI, etc 🧬 🖥️
Anshul Kundaje @anshulkundaje.bsky.social Genomics, Machine Learning, Statistics, Big Data and Football (Soccer, GGMU)
Jimmie Ye @yimmieg.bsky.social Genome scientist becoming engineer. Immunologist. Geneticist. Dabbles in statistics and statistical learning. Home @UCSF, affiliated with Arc and PICI.
Marc Suchard @msuchard.bsky.social Striving to provide better evidence to improve health globally! Professor, Departments of Biostatistics, Computational Medicine and Human Genetics, UCLA
Stephen Turner @stephenturner.us FIeld guide. Quartermaster. Associate Professor and Research Dean at UVA School of Data Science. Views my own.
Web: https://datascience.virginia.edu/people/stephen-turner
Newsletter: https://blog.stephenturner.us
Ming Tommy Tang @tommytang.bsky.social Director of bioinformatics at AstraZeneca. On my way to helping 1 million people learn bioinformatics. Educator, Biotech, single cell. Also talks about leadership.
Grab my new book https://divingintogeneticsandgenomics.kit.com/wtdt_bioinformatics
Saez-Rodriguez Group @saezlab.bsky.social Account of the Saez-Rodriguez lab at EMBL-EBI and Heidelberg University. We integrate #omics data with mechanistic molecular knowledge into #opensource #ML methods
Website: https://saezlab.org/
GitHub: https://github.com/saezlab/
Bart Deplancke @bartdeplancke.bsky.social Professor in Systems Biology & Genetics @EPFL, opinions my own; Single Cell Omics / Gene Regulation / Transcription Factor / Stem Cells / Regulatory Variation / ML / Imaging / Adipose Biology / Microfluidics
https://www.epfl.ch/labs/deplanckelab
Mark Robinson @markrobinsonca.bsky.social statistical bioinformatics; canadian / swiss; #methodsmatter #rstats; open science advocate; grumpy towards prestige worshippers, excessive admin and bros; will sacrifice sleep for a sunrise.
https://robinsonlabuzh.github.io/
Shila Ghazanfar @shazanfar.bsky.social 
James Zou @jameszou.bsky.social @Stanford Professor. AI for science and medicine. 
Valentine Svensson @nxn.se Molecular cell biology and stats / ML, mostly scRNA-seq.
Principal Scientist at Tahoe Tx.
https://www.nxn.se/archive
Krishnaswamylab.org @krishnaswamylab.bsky.social We develop AI methods for science, particularly deep learning methods based on data geometry, topology and dynamics systems.
Steven Kleinstein @skleinstein.bsky.social Computational immunologist; Professor at Yale School of Medicine; Co-Director, Computational Biology & Biomedical Informatics; B cell receptor sequencing analysis, http://immcantation.org + multi-omics signatures of infection, vaccination & autoimmunity.
Saskia Freytag @saskiafreytag.bsky.social Lab Head at the WEHI and the Brain Cancer Center by CB4BC. BioinfoMagician using computational biology, spatial and single cell omics so that one day no lives will be lost to brain cancer.
Marco Varrone @marcovarrone.bsky.social Postdoc in Computational Biology at @CirielloLab @dbc_unil.
Machine Learning for spatial omics.
https://batcheffect.com
Lana Garmire @lgarmire.bsky.social Faculty. multiomic. EMR. informatics. womenhealth.#mom of 2. PECASE awardee. Fellow AIMBE. DEI ✊. Opion's my own.
Joshua Bull @joshuabull.bsky.social Postdoc mathematician working in spatial biology and cancer at @oxfordmathematics.bsky.social @ox.ac.uk
Developer of https://docs.muspan.co.uk
Charlotte Bunne @bunnech.bsky.social Assistant Professor at @EPFL in Computer Science and Life Sciences. PostDoc at @Genentech and @Stanford. PhD at @ETH and @BroadInstitute.
www.aimm.epfl.ch
Eray Sahin @eraysahin.bsky.social Bioinformatician at Universitätsklinikum Würzburg
Spatial trx, neonatal immunity, multi-omics, gut-brain axis
he/him 🏳️🌈
LinkedIn: https://www.linkedin.com/in/eray-sahin
Elisabetta Mereu @elimereu.bsky.social Group leader at the Josep Carreras Leukemia Research Institute. Passionate of single-cell genomics and ML! Advancing personalized therapies for cancer and beyond. #singlecellgenomics #Immunotherapy
Arjun Krishnan @compbiologist.bsky.social ML/AI methods & tools for using massive public data collections to gain insights into complex disease mechanisms.
Associate Professor & Group leader thekrishnanlab.org at the Dept. of Biomedical Informatics at CU Anschutz.
Laura Cantini @cantinilab.bsky.social PI of the machine learning for Integrative genomics lab @pasteur.fr and @CNRS.bsky.social
#NewPI #DiversityEqualityInclusion
Single-cell, multi-omics, machine learning
Yu Xu @yuxu.bsky.social Senior Research Associate at Cambridge University
Genetic prediction, Multi-omics, Health data science, Machine Learning 
Jalees Rehman @jalees.bsky.social Head, Dept of Biochemistry & Molecular Genetics, Univ of Illinois, College of Medicine: cell biology, vascular biology, genomics, computational biology, immunology, regeneration, neuroscience; https://chicago.medicine.uic.edu/bmg/profiles/rehman-jalees/
Ethan Weinberger @ethanweinberger.bsky.social Ph.D student in Computer Science and Engineering at the University of Washington working with Su-In Lee.