Polars @pola.rs Dataframes powered by a multithreaded, vectorized query engine, written in Rust.
Low Level @lowleveltv.bsky.social computer whisperer 🧙♂️ internet person 📸 https://lowlevel.tv
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arxiv cs.CL @arxiv-cs-cl.bsky.social Computer Science -- Computation and Language
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Unusual Whales @unusualwhales.bsky.social Skeet about markets and political corruption
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Get $50-$5000 to trade: http://bit.ly/4ayctTD
Florian Jug @florianjug.bsky.social Computer scientist on a life-science mission. Working on pushing bioimage analysis, computer vision, AI/ML methods for the life sciences. Love running and pottery.
Stanford NLP Group @stanfordnlp.bsky.social Computational Linguists—Natural Language—Machine Learning
Richard Sever @richardsever.bsky.social Chief Science and Strategy Officer, openRxiv. Co-Founder, bioRxiv and medRxiv.
Michael Eisen @mbeisen.bsky.social Nematode antagonist
J. Chris Pires @jchrispires.bsky.social Professor passionate about student success & team science #firstgen #Brassica enthusiast walking Dogs of the Plant World
#Agriculture #Food #HigherEd #EduSky #Agsky #SciComm & more
#Soil #Crop #Science ; opinions mine
Michael Hoffman @michaelhoffman.bsky.social Chair, Computational BIology and Medicine Program, Princess Margaret Cancer Centre, University Health Network.
Associate Professor, Medical Biophysics, University of Toronto.
Disclosures: https://github.com/michaelmhoffman/disclosure/
Zamin Iqbal @zaminiqbal.bsky.social Professor of Algorithmic and Microbial Genomics at the University of Bath (UK). Pangenomes, drug resistance (esp TB), data structures for DNA search, plasmid evolution, global microbial surveillance. Open Data, reproducibility. https://zam-iqbal-lab.org/
Cameron Thrash @jcamthrash.bsky.social Professor, USC Marine and Environmental Biology, microbe hunter. Dad, husband. he/him. Not a bot. thethrashlab.com @the.thrash.lab
Claus Wilke @clauswilke.com Computational biologist, data scientist, occasional blogger | https://blog.genesmindsmachines.com/ | https://clauswilke.com/ | Opinions are my own and do not represent UT Austin.
Willem van Schaik @wvschaik.bsky.social Microbiology, microbiome, antimicrobial resistance. Sometimes UK politics. Head of Research of the School of Infection, Inflammation and Immunology, University of Birmingham. Also Co-Director of @target-amr.bsky.social.
Alex Rubinsteyn @alexr.bsky.social personalized cancer immunotherapy = genomics + immunology + machine learning + oncology
(pirl.unc.edu)
Mike Schatz @mikeschatz.bsky.social Bloomberg Distinguished Professor at Johns Hopkins University. http://schatz-lab.org
Doc Edge @docedge.bsky.social Associate professor in quantitative and computational biology @USC. Genetics, evolution, statistics. https://edgepopgen.github.io/edgelab/
Anshul Kundaje @anshulkundaje.bsky.social Genomics, Machine Learning, Statistics, Big Data and Football (Soccer, GGMU)
Keith Robison @omicsomics.bsky.social Computational biologist & blogger
Quaid Morris @quaidmorris.bsky.social Computational biology, machine learning, AI, RNA, cancer genomics. My views are my own. https://www.morrislab.ai
He/him/his
Ben Langmead @benlangmead.bsky.social Professor of Computer Science @ JHU. https://www.langmead-lab.org/ https://www.youtube.com/BenLangmead
Joshua Shapiro @josh.shapiro.foo not ‘Eureka’ but ‘That’s funny…’
Current projects: Biological data and Childhood cancer at http://ccdatalab.org, part of https://alexslemonade.org
Not governor.
Mike Inouye @mikeinouye.bsky.social Computational biologist. Geriatric Millennial. Professor, University of Cambridge. British | Australian | American.
www.inouyelab.org | Cambridge, UK
Torsten Seemann @torstenseemann.bsky.social Professor @ University of Melbourne, Australia
Microbial bioinformatics, genomics, software, clinical and public health microbiology
https://tseemann.github.io
Titus Brown @titus.idyll.org I am not a deep man, but I have many shallows. ctbrown@ucdavis.edu, http://ivory.idyll.org/blog/.
Rob Patro @robp.bsky.social Professor of CS @ University of Maryland. Proud Rust advocate! I ♥ science & compiled, statically-typed programming languages! Views are my own. Tech stack: https://github.com/rob-p/tech-stack.
Nicolas Robine 🇪🇺🇫🇷🇺🇸 @nicorobine.bsky.social Artisanal Genomics since 2002. Mostly in English, sometimes in French. #NoPasaran
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social
Matt Loose @minomatt.bsky.social Sequencing, adapting and exploring genomes.
https://linktr.ee/matt.loose
Jonathan Jacobs @bioinformer.bsky.social UofArizona #Aggie > UofMaryland PhD > NIH/NCI PostDoc > > > ATCC #Genomics, #Bioinformatics, Data Authenticity, #BioSecurity. 🎲♟️👾🎮 🎸 🧪 🧬 🖥 🦠🚀🏎️ he/him.
https://bioinformer.substack.com
Ivan Liachko @ivanliachko.bsky.social Scientist, father, founder/CEO of PhaseGenomics; opinions are my own and probably not the position of the company.
Ian Dworkin @idworkin.bsky.social Evolutionary biologist in love with morphology, especially size & shape. Drosophila Quantitative/Statistical geneticist. Dabbler in Development. Occasional genomicist.
Thinking about variation in cell size a lot lately.
https://dworkinlab.github.io
Michael Guertin @guertin.bsky.social Professor of Molecular Biology and Genomics at UConn Health. The lab studies gene regulation, focusing on transcription factors
Chris Fields @cjfields.bsky.social Microbiologist turned computational biologist
Bioinformatics Core Director, HPCBio
Open Bioinformatics Foundation Board Member
#metagenomics #microbiome #pangenomics
#python #r (yeah yeah, and #bioperl)
Todd J. Treangen @treangen.bsky.social Computational tools for microbial genomics, metagenomics, & public health 🧬🦠🔎
Associate Professor of Computer Science, Rice University 🦉💻
Treangen Lab website: www.treangenlab.com
Josh Quick @scalene.bsky.social UKRI Future Leaders Fellow, University of Birmingham
Jason “Obstacle to Progress” Williams @jasonwilliamsny.bsky.social Assist Dir. @DNALC @CSHL
Lee Katz @lskatz.github.io Co host of the Micro Binfie podcast
Andrew Page @andrewjpage.bsky.social Microbial Bioinformatics scientist. Host the MicroBinfie and The Bioinformatics Lab Podcasts. CTO at Origin Sciences
Phil Ewels @ewels.bsky.social 🧬 Scientist (bioinformatics / genomics), 🧑🏻💻 software developer, 🪴 community builder.
Product Manager for open source @seqera.io
Andrew Carroll @acarroll.bsky.social Product lead Genomics Google Research
Chris Saunders @ctsa.bsky.social Rare disease and cancer analysis models for sequencing data. Art school survivor. Views my own.
Nils Homer @nilshomer.com I write software for Biologists. Founder @fulcrumgenomics, Bioinformatician, Computer Scientist, Coder, Father of 2xGirls. Opinions are my own.
John Didion @jdidion.bsky.social Absolute binf. 🧬/🦀.
froggleston @froggleston.carpentries.org Director of Technology @thecarpentries, @froggleston@mstdn.science, open source advocate, heavy metal lover, he/him/they, @docfrogs coffee, @antididact guitarist, noob
Larry Hunter @proflhunter.bsky.social Knowledge based biomedical data science, artificial intelligence for discovery in molecular biomedicine, computational bioethics, theory of mattering. University of Chicago / Big Island HI
Ryan Morin 🇨🇦 @morinryan.bsky.social Bioinformatician, genome biologist, data scientist, lymphomaniac, cynic, creator of Scholar Goggler (http://scholargoggler.com)
Jeff Saucerman @jsauce7.bsky.social Professor of Biomedical Engineering and Cardiovascular Medicine at UVA. Systems biology to discover drugs for heart disease. Hiking with my dog in Shenandoah NP, around Charlottesville. https://engineering.virginia.edu/faculty/jeffrey-saucerman
Erik Garrison @thinks.lol computational biologist: genomes, evolution, DNA
Chris Miller @chrismiller.science I study cancer at Washington University in St Louis. Cancer Genomics, Bioinformatics, Data Viz, Tumor Evolution, AML, Immunotherapy, Irreverent humor 🧬 🖥️ mostly @chrisamiller on other platforms
Oliver Hofmann @fiamh.bsky.social Cancer genomics in Melbourne, Australia, at day. Board games - https://instagram.com/fiamh_bgg - and dog training - https://instagram.com/totoro.the.lappie - at other times. He/him.
Daniel Standage @byuhobbes.bsky.social
Páll Melsted @pmelsted.bsky.social Professor @hi.is in CS, head of rna seq data analysis at decode genetics (views are mine). Bioinformatician, epistemic trespasser, &c.
ps. I hate GTF files
Arun Seetharam @arnstrm.bsky.social Lead Bioinformatics Scientist @ RCAC, Purdue University| Genomics, Data Science, and Computational Biology | Empowering research with innovative solutions | Let’s connect for collaborations in life sciences and beyond!
nf-core @nf-co.re A community effort to collect a curated set of analysis pipelines built using Nextflow.
BF Francis Ouellette @bffo.bsky.social Bioinformatics 🧬🖥️🧪
#DATABASE OUP Editor-in-Chief;
#PLOS Comp Biol Education Sect. Editor;
#OpenScience #OpenAccess #OpenData;
friend of @jxtxfoundation.bsky.social,
@abinstitute.bsky.social, @mon-bug.bsky.social
- I am 🇨🇦
Andreas Sjödin @druvus.bsky.social Microbial genomics and forensics, Metagenomics, Francisella, Long-read seq, AI
Devon Ryan @dpryan79.bsky.social An American in Germany, an ion channel guy in bioinformatics, a proponent of scientific skepticism in an irrational world.
@devon@genomic.social, @dpryan79 on twitter and github
Ming Tommy Tang @tommytang.bsky.social Director of bioinformatics at AstraZeneca. On my way to helping 1 million people learn bioinformatics. Educator, Biotech, single cell. Also talks about leadership.
Grab my new book https://divingintogeneticsandgenomics.kit.com/wtdt_bioinformatics
Robert Aboukhalil @robert.bio Co-founder at https://omgenomics.com. Creator of https://42basepairs.com, https://sandbox.bio, https://biowasm.com, https://levelupwasm.com. Bioinformatics, genomics.
About me: https://robert.bio
Winston Hide @winhide.bsky.social Systems translational bioinformatics.
Wei Shen 沈 伟 @shenwei356.bsky.social Associate professor of Bioinformatics at Chongqing Medical University, China. Lab: https://mbio.info
Geraldine Van der Auwera @geraldinevda.bsky.social Professional nerd, lead developer advocate at Seqera, the Nextflow company
Rob Syme @robsyme.bsky.social Scientist of sorts. Australian, living in Quebec, working for a Spanish startup.
Interested in crop genomics, data, reproducibility, provenance, and data publishing. Big Nextflow fan.
Brian Krueger, PhD @h2so4hurts.bsky.social Scientific strategist | Storyteller | Genomics, Lab diagnostic and high throughput automation | Coder | Comments are my own | Omic.ly
Maria Nattestad 🧬💻 @omgenomics.com Co-founder OMGenomics Labs. Creator of Circa https://circa.omgenomics.com, Ribbon, YouTube.com/omgenomics. Worked on DeepVariant+DeepConsensus at Google.
Tami Lieberman @contaminatedsci.bsky.social Associate Professor, MIT
Still thinking about the 10^9 mutations generated in your microbiome today.
Website: http://lieberman.science
Sasha Gusev @sashagusevposts.bsky.social Statistical geneticist. Associate Prof at Dana-Farber / Harvard Medical School.
www.gusevlab.org
Jill Wegrzyn @jillwegrzyn.bsky.social Associate Prof @UConn, Computational Biology Core Director, TreeGenes Database, Plant Computational Genomics, Conservation Genetics, Forests
Artist, Foodie, Tree Hugger - P Paul Medvedev @pashadag.bsky.social Algorithmic Bioinformatics Researcher and Teacher. Posts about research results and educational/mentorship topics (for details, see http://bit.ly/380vX22).
Kieran Campbell @kieranrcampbell.bsky.social https://www.camlab.ca | ML for cancer genomics + single-cell and spatial computational methods | Toronto Canada 🖥️🧬
Maxime U Garcia @maxulysse.github.io Bioinfomagician/PhD in Bioinformatics, developing @nextflow.io @nf-co.re pipelines
Posts and RPs in English/French - He/him
Florian Wünnemann @flowuenne.bsky.social Bioinformatics engineer at Seqera (seqera.io)
Genomics 🧬 | Spatial omics🔬 | technology 💻 | soccer ⚽
Working towards scalable and reproducible science with #Nextflow
Living in Montreal 🇨🇦
Alex Peltzer @alexpeltzer.bsky.social Clinical Bioinformatics @boehringer with interests in NGS, cloud, @nf_core , cancer & immunology. Tweets are my own. @alex_peltzer@genomic.social
ProfColinBean @profcolinbean.bsky.social Freshwater fish biologist - big on rare species, their ecology and conservation. Also known to dabble in non-native species issues. Personal account and all views are entirely my own. Leantóir Celtic FC 🍀
Teif lab @teiflab.bsky.social Teif lab at the University of Essex. We work on gene regulation in chromatin and applications to liquid biopsies, using approaches of genomics, biophysics, bioinformatics & AI. Our focus is nucleosomics, TF binding, CTCF, cfDNA. https://generegulation.org
zach cp @zcpbx.bsky.social Biochem, microbio, and protein science. Learning Rust for machine learning.
Anthony Mathelier @amathelier.bsky.social Computational biologist interested in gene expression regulation.
Associate Director and Group Leader at Norwegian Centre for Molecular Biosciences and Medicine, University of Oslo, Nordic EMBL Partnership for Molecular Medicine.
https://mathelierlab.com
Eric Kernfeld @ekernf01.bsky.social Statistician and computational biologist; uw alum; jhu student. He/him. http://ekernf01.github.io
Nicky Whiffin @nickywhiffin.bsky.social Associate Professor @ Big Data Institute, University of Oxford
2024 Lister Institute Fellow
genomics | rare disease | gene regulation | genetic therapies
https://rarediseasegenomics.org/
(field) hockey player | cyclist | hiker
Sebastian Schönherr @sebschoenherr.bsky.social computational genomics prof at med uni innsbruck. co-created the michigan imputation server. co-created two kids ❤️.
interested in AI, genomics, chronic diseases, nextflow, complex gene regions
https://genepi.i-med.ac.at/team/schoenherr-sebastian
Lukas Forer @lukfor.bsky.social Assistant Professor of Genome Informatics. MedUni Innsbruck. Cloud Computing, Machine Learning, AI, Genotype Imputation. Open Source and Open Science. Co-Creator of Michigan Imputation Server and www.askimed.com. Creator of www.nf-test.com.
Evan Floden @evanfloden.bsky.social Supporting scientists adopt modern software tooling to do better science. CEO & co-founder @seqera.io. Advocate for @openscience.software
Bruce Hamilton @bahome.bsky.social Professor, personal account. Genetics, genomics, brain development, other stuff. Typo-prone. If you’re nice I’ll post dog photos.
Flo Débarre @flodebarre.eurosky.social Personal account
Evolutionary biologist, senior scientist at CNRS/Sorbonne Université
Interests: origins and control of infectious diseases and conspiracy theories; diversity in science; scientific publishing
https://www.normalesup.org/~fdebarre/
EN & FR
Kristian G. Andersen @kgandersen.bsky.social Infectious diseases & genomics. Immunologist in (voluntary) exile. Minimal sarcasm. Fierce HOA (Hater of Acronyms). Personal account - opinions expressed are my own and not those of my employer.
Michael Baym @baym.lol Associate Prof @HarvardMed. Microbial evolution, antibiotic resistance, mobile genetic elements, algorithms, phages, molecular biotech, etc. Find me under “floating dumpster fire”
Graham Coop @gcbias.bsky.social Population and evolutionary genetics @UCDavis. Posts, grammar, & spelling are my views only. He/him. #OA popgen book https://github.com/cooplab/popgen-notes/releases
Kevin Mitchell @wiringthebrain.bsky.social Neurogeneticist interested in the relations between genes, brains, and minds. Author of INNATE (2018) and FREE AGENTS (2023)
Mark Peifer (He, him) @peiferlabunc.bsky.social Cell adhesion, cytoskeletal regulation, Wnt signaling & wherever science leads us + wildflowers & my own idiosyncratic views. First gen college grad
Diversity, equity & Inclusion are core American Values
https://peiferlab.web.unc.edu
Vaughn Cooper @vscooper.micropopbio.org Evangelist for the study of evolution in action by everyone.
Pitt Prof | ASM President|EvolvingSTEM | biofilms | EvMed | genomics entrepreneur (@SeqCoast.bsky.social, @midauthorbio.bsky.social)| exercise addict ~ swim bike run
Jeffrey Ross-Ibarra @jrossibarra.bsky.social evolutionary genomics of maize and wild relatives. erstwhile ethnobotanist. purveyor of bad puns. dad. prof and HPC director at UC Davis. not actually a cool cow from 1994. rilab.ucdavis.edu. views, especially bad ones, mine only (he/him)