Yoshihiro Shibuya @yhhshb.bsky.social Post-Doc at Institut Pasteur France. Interested in algorithms and data structures for bioinformatics
@recombseq.bsky.social @recombseq.bsky.social
@genscaleteam.bsky.social @genscaleteam.bsky.social
Pierre Marijon @pierre-marijon.bsky.social Research engineer, #bioinformatics, #genomic, #assembly, #variantcalling he|him #BiInSci #dyslexic #disabled
https://pierre.marijon.fr/link.html
Téo Lemane @tlemane.bsky.social
Guillaume GAUTREAU @guigau.bsky.social PhD in #CompBio. (Meta/Pan)genomics. Health Law. GDPR compliance.
http://orcid.org/0000-0002-0970…
INRAE scientist at MaIAGE.
Roland Faure @rfaure.bsky.social Sequence bioinfomatician, algorithms, methods.
Postdoc in Institut Pasteur in Rayan Chikhi's lab
@dgautheret.bsky.social @dgautheret.bsky.social Trying to make sense of #RNA information.
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social
Riccardo Vicedomini @rvicedomini.bsky.social CNRS researcher at @irisa-lab.bsky.social / @genscaleteam.bsky.social- L Heng Li @lh3lh3.bsky.social Associate Professor
DFCI & HMS
Léo Ackermann @leoackermann.bsky.social PhD student in bioinformatics w/ Karel Břinda and Pierre Peterlongo (Inria/Irisa)
🧬 Leveraging structure of bacterial genome datasets for large-scale algorithms
🌐 lacker.gitlab.io
Trois Kobolds dans un Muppet @icidesdragons.itch.io 🌲 PhD in trees / Docteur en arbres
🎲 TTRPG game designer / Concepteur de jeux de rôles
🦁 Hic Sunt Leones.
My games / Mes jeux https://icidesdragons.itch.io/
Blog https://icidesdragons.bearblog.dev/
Ko-Fi https://ko-fi.com/icidesdragons
docteurSid (Yoann Dufresne) @docteursid.bsky.social Compte perso FR pour discuter de tout mais surtout n'importe quoi. Informatique, électronique, jeux et politique (de gauche).
Français ou Anglais
Compte pro : @yoann.bsky.social
Dév jeux à controlleurs alternatifs : @collectifartefact.bsky.social
Gaëtan Benoit @gaetanbenoit.bsky.social Postdoc researcher in bioinformatics at Pasteur institute. Scalable methods and software for metagenomics. https://github.com/GaetanBenoitDev
Albert Vilella, PhD. @albertvilella.bsky.social Bioinformatics Scientist / Next Generation Sequencing, Single Cell and Spatial Biology, Next Generation Proteomics, Liquid Biopsy, SynBio, AI/ML in biotech // http://albertvilella.substack.com
Chloé Baudin @chloebdn.bsky.social PhD student trying to do interactomics and top-down 🔬
📍🇫🇷 Lille
Sumaiya Nazeen @snz20.bsky.social Postdoctoral Research Fellow, DBMI, HMS, Neurology, BWH
Sudarsky Scholar'22
MIT EECS SM'14, PhD'19
Fulbright S&T Fellow'12
Ludwig Center Fellow'15
She/Her/Hers
@lbartels7.bsky.social @lbartels7.bsky.social
Gu Zhenhao @guzhenhao.bsky.social PhD student at NUS Computing / Genome Institute of Singapore. Alto clef enjoyer. My work playlist: https://www.youtube.com/playlist?list=PLPgSTwKT0Yv8bm859AW-s3lqjEKPBCS0h
Alexander Petri @alexanderjpetri.bsky.social PHD student in Computational Mathematics @ Stockholm University, developing algorithms for long read sequencing data, github: https://github.com/aljpetri/
Ryan Teo @teojcryan.bsky.social Computational Biology PhD Student at the University of Birmingham. (Meta)genomic pathogen surveillance, infectious disease modelling, and BW disarmament. 🇬🇧/🇸🇬
Pavel Veselý @pavelvesely.bsky.social Computer scientist at Charles University, Prague 🇨🇿 I like all kinds of efficient algorithms and data structures for large datasets || also ⛰️🇺🇦https://iuuk.mff.cuni.cz/~vesely/
Li Song @mourisl.bsky.social 毛利元光. Assistant Prof at the Department of Biomedical Data Science at Dartmouth College. Research on bioinformatics, algorithms. Lab page: mourisl.github.io
Bonsai Sequence Bioinformatics @bonsaiseqbioinfo.bsky.social Research group in Lille, Fr.
Bastien Degardins @bdegardins.bsky.social PhD student at @univlille.bsky.social
Graph visualisation for RNA and DNA sequences and databases
kamil hepak 🦉 @kmlhpk.bsky.social interested in algorithmic bioinformatics 💾🧬
Antoine Limasset @npmalfoy.bsky.social CNRS researcher in bioinformatics
Lille, France (Bonsai team).
I develop efficient computational methods to analyze massive sequencing data, creating scalable tools for genomics, transcriptomics, and metagenomics.
https://malfoy.github.io/
Karel Břinda @brinda.eu ‖ Permanent Researcher / INRIA Start. Faculty @ INRIA Rennes 🇫🇷 ‖
BioInfo/CompBio: algorithms, genomics, pathogens & rapid diagnostic of antibiotic resistance《 https://brinda.eu | https://github.com/karel-brinda 》
@gaellebaudemont.bsky.social @gaellebaudemont.bsky.social
bioRxiv Genomics @biorxiv-genomic.bsky.social
Laurent Jacob @laurentjacob.bsky.social Researcher in statistics and machine learning for genomics
https://laurent-jacob.github.io/
Mikaël Salson @mikael-salson.univ-lille.fr Working on heuristics and data structures for the analysis of genomic data (@bonsaiseqbioinfo.bsky.social, CRIStAL, ULille).
Teaching computer science, bioinformatics and scientific methods at ULille.
https://mikael-salson.univ-lille.fr
Camila Duitama @camiladuitama.bsky.social Bioinformatics🧬👩🏽💻 and politics👈. Decolonial, anticapitalist, anti imperialist and migrant from 🇨🇴currently living in 🇫🇷. Un corazón de mango 🥭 del Sinú. Opinions are my own, they do not represent my employer’s view.
Edwy Plenel @edwyplenel.bsky.social Journaliste, cofondateur de Mediapart
Michael Hoffman @michaelhoffman.bsky.social Chair, Computational BIology and Medicine Program, Princess Margaret Cancer Centre, University Health Network.
Associate Professor, Medical Biophysics, University of Toronto.
Disclosures: https://github.com/michaelmhoffman/disclosure/
Michael Baym @baym.lol Associate Prof @HarvardMed. Microbial evolution, antibiotic resistance, mobile genetic elements, algorithms, phages, molecular biotech, etc. Find me under “floating dumpster fire”
Adam Phillippy @aphillippy.bsky.social Finished a human genome @ NHGRI, working on a few hundred more @ Johns Hopkins University 👨💻
Lab: https://genomeinformatics.github.io
Titus Brown @titus.idyll.org I am not a deep man, but I have many shallows. ctbrown@ucdavis.edu, http://ivory.idyll.org/blog/.
Tim Triche, Jr.🔰 @timtriche.bsky.social Executive panhandler, trichelab.vai.org
Posts may contain trace quantities of blood🩸, chromatin 🧬 & stats 🧮
https://scholar.google.com/citations?user=AOoIO74AAAAJ
Views expressed are my own (but for the right price they can be yours!)
Mike Schatz @mikeschatz.bsky.social Bloomberg Distinguished Professor at Johns Hopkins University. http://schatz-lab.org
Ben Langmead @benlangmead.bsky.social Professor of Computer Science @ JHU. https://www.langmead-lab.org/ https://www.youtube.com/BenLangmead
Niema Moshiri @niema.net Associate Teaching Professor of Computer Science at UC San Diego, consulting for PlayStation and Blizzard, Bioinformatician by training, SD-raised. https://niema.net
Jason “Obstacle to Progress” Williams @jasonwilliamsny.bsky.social Assist Dir. @DNALC @CSHL
Todd J. Treangen @treangen.bsky.social Computational tools for microbial genomics, metagenomics, & public health 🧬🦠🔎
Associate Professor of Computer Science, Rice University 🦉💻
Treangen Lab website: www.treangenlab.com
Robert Haase @haesleinhuepf.bsky.social Biomedical Computer Vision & Language Models, scads.ai / Leipzig University, also NFDI4BIOIMAGE, NEUBIAS/GloBIAS, GPUs, AI, ML 🔬🖥️🚀 views:mine
Elinor Karlsson @elinork.bsky.social Scientist & artist. Prof at UMass Chan Med School & Broad Institute. Rice U alum. Founder of Zoonomia & DarwinsArk.org. Wants your dog’s DNA. And your cat’s! 🇸🇪🇳🇿🇺🇸
Nils Homer @nilshomer.com I write software for Biologists. Founder @fulcrumgenomics, Bioinformatician, Computer Scientist, Coder, Father of 2xGirls. Opinions are my own.
Karen Miga @khmiga.bsky.social Associate Professor of Biomolecular Engineering at the University of California, Santa Cruz; Associate Director, UC Santa Cruz Genomics Institute
Erik Garrison @thinks.lol computational biologist: genomes, evolution, DNA
Alicia Oshlack @aliciao.bsky.social Bioinformatics and Computational Biology. Australia
John Didion @jdidion.bsky.social Absolute binf. 🧬/🦀.
Milot Mirdita @milot.bsky.social Open source #bioinformatics at Sungkyunkwan University 🇰🇷 | former Steinegger Lab @ SNU, Söding Lab @ MPI-NAT | http://mstdn.science/@milotmirdita
Mikhail Kolmogorov @mishakolmogorov.bsky.social Tenure-track Stadtman Investigator at NIH/NCI. I like computational/cancer/metagenomics. The views are my own.
@luizirber.bsky.social @luizirber.bsky.social
Jeff Gentry @geoffjentry.bsky.social Noted curmudgeon. Software, biotech, food & drink. All opinions my own, no one else wants them anyways.
Jim Shaw @jimshaw.bsky.social Postdoc at Dana-Farber and Harvard Med with Heng Li (@lh3lh3.bsky.social). Prev: UBC / UofT.
I like thinking about biological sequence analysis and its applications to metagenomics / microbial genomics.
https://jim-shaw-bluenote.github.io
Sabrina Nystrom @snystrom.com Data science, genomics, software development. Formerly: Eukaryotic gene regulation, phage, graph genomes. On hiatus building distributed systems.
snystrom.com
Benedict Paten @benedictpaten.bsky.social Professor of Biomolecular Engineering at the University of California, Santa Cruz; Associate Director, UC Santa Cruz Genomics Institute
raw9371 @raw937.bsky.social UNC Charlotte Associate Professor in Bioinformatics and Genomics. Computational molecular synthetic virologist.
Github - github.com/raw-lab
Website - rawlab.org
Matt Holt @holtjma.bsky.social Staff scientist at @PacBio; formerly @hudsonalpha; avid gamer; opinions are my own
Daniel Standage @byuhobbes.bsky.social
Tommi Mäklin @themaklin.bsky.social I do statistics, bacterial (meta)genomics and bioinformatics software development.
Tessa Pierce Ward, PhD @bluegenes.bsky.social Genomics/metagenomics, bioinformatics, open science. Asst Researcher @ UC Davis, remote from San Diego. Budding rustacean.
Formerly: @Scripps_Ocean, @Stanford. Nature lover and book fiend. she/her.
Liz Tseng @magdoll.bsky.social Product manager @PacBio / RNA / bioinformatics / aerialist & pole dancer / opinions are my own and do not reflect views of my employer
Tony Cox @coxtonyj.bsky.social Bioinformatics, string algorithms, DNA sequence analysis. Formerly Solexa/Illumina, bioinformatics consulting at genomerics.com, now quantum error correction at @riverlane.com https://www.linkedin.com/in/coxtonyj/
Ilia Minkin @minkinpark.bsky.social Research Associate @ UConn | Algorithms, Genomics, Python, C++
Alexis Battle @alexisbattle.bsky.social Professor at Johns Hopkins Biomedical Engineering and CS, Director Malone Center for Engineering in Healthcare, Research Director (Strategy and Partnerships) Data Science and AI Institute
Wei Shen 沈 伟 @shenwei356.bsky.social Associate professor of Bioinformatics at Chongqing Medical University, China. Lab: https://mbio.info- D Daniel Baker @dnbaker.bsky.social Computational genomics, with focus on indexing + search, data re-use, and scalable algorithms.
C++/Rust enthusiast, hardware/algorithms.
Johns Hopkins PhD, prior ARUP Laboratories and PacBio.
Currently building GPU-accelerated platform at Roche.
Fulcrum Genomics @fulcrumgenomics.com We provide specialized bioinformatic services to advance your technology and the understanding of human disease.
https://www.fulcrumgenomics.com
Sean Simmons @seankenneths.bsky.social Computational biologist at the Broad Institute- J John Marshall @johnm.bsky.social Bioinformatics tools developer at Australia’s Centre for Population Genomics. Will edit GA4GH specifications for food. New Zealander fairly recently returned after a decade in the U.K.
Barış Ekim @ekimb.bsky.social 🇹🇷. Postdoc @Yale, formerly @MIT @Broad. Skeets(?) in TR/EN, views my own.
James Bonfield @jbonfield.bsky.social Walker, archer, and volunteer woodland warden by weekend, and bioinformatics software engineer and general geek by weekday.
My favourite prime is 15551, my favourite colour is, obviously, octarine, and I love nothing more than being immersed in nature.
Ragnar {Groot Koerkamp} @curiouscoding.nl Postdoc on high troughput bioinformatics @ KIT Karlsruhe;
IMO, ICPC, Xoogler, Rust, road-cycling, hiking, wild camping, photography
Clint Valentine @moonlight.bio Interested in how mutations form in DNA, adventure cycling, bioinformatics, and hand-rolled pasta. Professional crud & stuff wrangler, aspiring artisanal software author. Opinions are my own. Unless they're good; then my employer might want them.
Armin Töpfer @armintoepfer.com Husband. Parent. Dr sc @ETH. Bioinformagician. Father of @PacBio HiFi. C++ Purist. Geek. Digital Artist. Electronic music. Speaks in memes. Opinions are my own!
Mohsen Zakeri @mohsenzakeri.bsky.social Postdoctoral Fellow at Johns Hopkins University, Computational Biology ❤️
www.mohsenzakeri.com
Ben Raphael @braphael.bsky.social Graduate Class of 1991 Professor of Computer Science, Princeton University
Seth Stadick @ducktapeprogrammer.bsky.social Bioinformatics. Rust. Mojo.
Yann Ponty @yannponty.bsky.social Bioinformatics researcher (CS PhD) • #RNA enthusiast • AI-skeptic but rational • Employed by #CNRS/#Polytechnique but views mine - D Daniel Liu @daniel-c0deb0t.bsky.social work: anthropic, previously: rust/bioinformatics
Daniel Jones @dcjones.bsky.social Computational biologist at Fred Hutchinson Cancer Center (See my work here: https://dcjones.github.io/). I also post about baking, books, and Seattle politics.
Aaron Quinlan (he/him) @aaronquinlan.bsky.social Origins and consequences of genome mutation; software for genomic discovery.
Prof. and Chair of Human Genetics at U. of Utah.
https://www.genetics.utah.edu/
http://quinlanlab.org
Anshul Kundaje @anshulkundaje.bsky.social Genomics, Machine Learning, Statistics, Big Data and Football (Soccer, GGMU)
Fritz Sedlazeck @sedlazeck.bsky.social
Stephanie Hicks @stephaniehicks.bsky.social Associate Professor of Biostatistics and Biomedical Engineering at Johns Hopkins. stephaniehicks.com
Michael Love @mikelove.bsky.social Genetics, bioinformatics, comp bio, statistics, data science, open source, open science!
Wolfgang Huber @wkhuber.bsky.social Computational Biology and Statistics
Spatial Omics, Precision Oncology
R, Bioconductor, Open Science
https://www.huber.embl.de
Textbook: Modern Statistics for Modern Biology
https://www.huber.embl.de/msmb/ (with @sherlockpholmes.bsky.social)
Constantin Ahlmann-Eltze @const-ae.bsky.social Scientist at Isomorphic Labs. Previously at UCL and EMBL working with Wolfgang Huber. Biology, ML, Python, R, cancer immunology
Susan Holmes🎲🖥️🧬 @sherlockpholmes.bsky.social Statistician,Mother,Prof,Grandmother(she/her)🇫🇷🇵🇹🇺🇸🧪.
🖋️with @wkhuber.bsky.social:Modern Statistics for Modern Biology (https://www.huber.embl.de/msmb/) #stats,#rstats,OSS,arXiv, microbial ecology,cytof,multi-omics,Bioconductor:phyloseq, DADA2
Torsten Seemann @torstenseemann.bsky.social Professor @ University of Melbourne, Australia
Microbial bioinformatics, genomics, software, clinical and public health microbiology
https://tseemann.github.io
Rafael Irizarry @rafalab.bsky.social Applied statistician. I tweet data-driven observations, data science educational materials, academic research updates, and the occasional joke.
Jian Ma @jianma.bsky.social Ray and Stephanie Lane Professor of Computational Biology at CMU School of Computer Science. https://www.cs.cmu.edu/~jianma/
Sergey Koren @sergek.bsky.social Scientist at NHGRI/NIH. Mapping complete genomes, finished a couple, working on more 🐮🐟🐒. Posts are my own opinion.