marine.microbiome.bsky.social @olivenaelle.bsky.social Marine microbiologist & bioinformatician | Community microbial interactions & C/N cycles | Marine Microbiome Lab (WUT-AMU, Wuhan)
Jess Smith @nanojess.io I do bioinformatics stuff with @fulcrumgenomics.com. I do garden stuff at home in Somerville, MA.
Cold Spring Harbor Laboratory Press @cshlpress.bsky.social
Areeba Patel @areebap.bsky.social AI, (epi-)genomics, pathology |
Head of Tech @ Heidelberg Epignostix |
PhD @dkfz.bsky.social with Felix Sahm and @moritzgerstung.bsky.social | @imperialcollegeldn.bsky.social alum
Ellison Institute of Technology @eit.org Translating scientific discovery into real world impact 🌍
www.eit.org
Yoshitaka Sakamoto @yos-sk.bsky.social A staff scientist at the National Cancer Center Research Institute, Japan
Matthew Cobb @matthewcobb.bsky.social Professor Emeritus (University of Manchester), writes on biology, history of science & French Resistance. Most recent book: a biography of Francis Crick. Now writing THE IDEA OF HEREDITY.
Link to publications: https://orcid.org/0000-0002-8258-4913
European Centre for Disease Prevention and Control @ecdc.europa.eu We’re the European Centre for Disease Prevention and Control. We aim to strengthen EU’s defences vs infectious diseases. Here to promote public health.
Ewan Birney @ewanbirney.bsky.social Director of EMBL-EBI. I have an insatiable love of biology. Consultant to ONT and Cantata (Dovetail)
🧬Yuval Ebenstein🧬 @hagenom.bsky.social Nucleic acid explorer and psychedelic music lover. I still Believe In Peace 🕊️Chemistry Prof@TelAvivUni, Founder of JaxBio
http://www.nanobiophotonix.com
https://jaxbio.com/
Mick Watson @mickwatto.bsky.social This is my political wing.
@single-molecule.bsky.social @single-molecule.bsky.social Electronic Genome mapper (EGM) using Nabsys OhmX, NGS, DNA, genomics, structural variants, fact-based politics, a little sports
Matt Parker @bioinfomatt.bsky.social Director, Clinical Bioinformatics Software at Oxford Nanopore in the EPI2ME team. Interested in regulated application of Nanopore sequencing. Also bikes, beers, trains, and the American Office.- R Robin Coope @robincoope.bsky.social Laboratory Automation and Biomedical Device Development.
David Eccles 🌻🇵🇸7x🩹🛡️ @gringene.org Neurodivergent freelance bioinformatician, cuddler of data, and theoretical geneticist, with a love for Free Software and the hacking thereof. Rangitāne o Wairau. He/they.
https://ko-fi.com/gringer
Website: https://www.gringene.org
@sonalhenson.bsky.social @sonalhenson.bsky.social
Flo Débarre @flodebarre.eurosky.social Personal account
Evolutionary biologist, senior scientist at CNRS/Sorbonne Université
Interests: origins and control of infectious diseases and conspiracy theories; diversity in science; scientific publishing
https://www.normalesup.org/~fdebarre/
EN & FR
Functional Genomics Center Zurich @fgcz-en.bsky.social Functional Genomics Center Zurich (FGCZ) is a joint platform of the ETH Zürich and the University of Zurich. #genomics #proteomics #metabolomics
Check us out on LinkedIn: https://tinyurl.com/fgczlinkedin
Andy Bond @andybond1.bsky.social Senior Bioinformatics Engineer at Genomics England
Martin Tobin @martintobin.bsky.social Genetic Epidemiologist, University of Leicester. Public Health Doc. Cyclist.
Andrew Routh @andrewrouth.bsky.social Molecular virologist | Deep-sequencer | Institute Investigator at Scripps Research |
Co-founder and CSO at ClickSeq Technologies | 🇬🇧 in 🇺🇸 | He/him | Dad
Mike Vella @vellamike.bsky.social Head of Machine Learning at Oxford Nanopore, driving fast algorithms and research to analyze DNA/RNA/Proteins.
Raphael Gottardo @rgottardo.bsky.social Biomedical Data Science Center Director @CHUV. Professor at @UNIL and @EPFL. AI, ML, and statistical learning for high-dimensional (single-cell/spatial) data in clinical and translational medicine. Interdisciplinary scientist passionate about data.
Estella Yixing Dong @estellayixingdong.bsky.social Applied Machine Learning @Bayer | PhD @CHUVLausanne | Immunotherapy, Single-Cell RNAseq, Spatial Transcriptomics, Statistics and Machine Learning. 📷⛸️🏔️
Jieran Sun @onesinglecell.bsky.social I treat every #singleCell gently. | PhD in Comp Bio at Lausanne University Hospital. #OpenScience #SpatialTranscriptomics
Casey Greene @casey.greenelab.com Chair of the Department of Biomedical Informatics at the University of Colorado School of Medicine. Research: transcriptomics, machine learning, public data - pick two of three. He/him. Views mine, not employer's.
Fabian Theis @fabiantheis.bsky.social Computational biologist @HelmholtzMunich, prof @TU_Muenchen & associate PI @sangerinstitute. Dad of 4 and mountain lover. Department news, see @CompHealthMuc
Greifflab @victorgreiff.bsky.social Professor of Computational and Systems Immunology @UniOslo.
Cofounder & Director of Computational Immunology @imprintlabs.bsky.social
Su-In Lee @suinlee.bsky.social Boeing Endowed Professor in the Allen School of Computer Science & Engineering at the University of Washington. Interested in AI/ML, computational biology, and AI in medicine. https://suinlee.cs.washington.edu/
Dr. Jean Fan @jef.works Associate prof comp biologist @JHUBME. Founder @cuSTEMized. Editor @PLOSCompBiol. Alum @HarvardDBMI @blairmagnet. Doing art like a science, science like an art.
Atul Butte @atulbutte.bsky.social Chief Data Scientist U of CA Health・Director, Bakar Computational Health Sci Institute・Distinguished Prof af UCSF・Entrepreneur・He/him・Opinions ⇨ my own
John Tsang @tsanglab.bsky.social Systems immunologist at Yale, @yalecsei.bsky.social, @czbiohub.bsky.social
Me: https://medicine.yale.edu/profile/john-tsang/
Lab: https://www.tsanglab.org
Center: https://medicine.yale.edu/systems-engineering-immunology/
Gioele La Manno @gioelelamanno.bsky.social Professor at #EPFL - #RNAVelocity inventor - Laboratory of Brain Development and Biological Data Science. Single-cell and spatial biologist studying brain development and lipids. #ERCStg investigator
Steve Turner @sjturn.bsky.social Immunologist @MonashUni, Head of Dept Microbiology, Past President of @ASImmunology; Trying to work out how immunity works, in particular T cells #Tcellsarecool #immunosky
Magnus Rattray @mrattray.bsky.social Professor of Computational & Systems Biology at University of Manchester. Applies machine learning and modelling to help understand the complexity of biology. idsai.manchester.ac.uk, https://www.ellismcr.org, @official-uom.bsky.social
Babak Alipanahi @babaka.bsky.social computational biology, artificial intelligence and large-scale datasets to improve human health
Julien Roux @julienroux.bsky.social Bioinformatician, Department of Biomedicine @ Uni Basel & Swiss Institute of Bioinformatics
Interested in bulk and single-cell omics, data analysis, experimental design, data visualization, R/Bioc, open science, EDI, etc 🧬 🖥️
Jimmie Ye @yimmieg.bsky.social Genome scientist becoming engineer. Immunologist. Geneticist. Dabbles in statistics and statistical learning. Home @UCSF, affiliated with Arc and PICI.
Marc Suchard @msuchard.bsky.social Striving to provide better evidence to improve health globally! Professor, Departments of Biostatistics, Computational Medicine and Human Genetics, UCLA
Saez-Rodriguez Group @saezlab.bsky.social Account of the Saez-Rodriguez lab at EMBL-EBI and Heidelberg University. We integrate #omics data with mechanistic molecular knowledge into #opensource #ML methods
Website: https://saezlab.org/
GitHub: https://github.com/saezlab/
Bart Deplancke @bartdeplancke.bsky.social Professor in Systems Biology & Genetics @EPFL, opinions my own; Single Cell Omics / Gene Regulation / Transcription Factor / Stem Cells / Regulatory Variation / ML / Imaging / Adipose Biology / Microfluidics
https://www.epfl.ch/labs/deplanckelab
James Zou @jameszou.bsky.social @Stanford Professor. AI for science and medicine.
Valentine Svensson @nxn.se Molecular cell biology and stats / ML, mostly scRNA-seq.
Principal Scientist at Tahoe Tx.
https://www.nxn.se/archive
Krishnaswamylab.org @krishnaswamylab.bsky.social We develop AI methods for science, particularly deep learning methods based on data geometry, topology and dynamics systems.
Steven Kleinstein @skleinstein.bsky.social Computational immunologist; Professor at Yale School of Medicine; Co-Director, Computational Biology & Biomedical Informatics; B cell receptor sequencing analysis, http://immcantation.org + multi-omics signatures of infection, vaccination & autoimmunity.
Saskia Freytag @saskiafreytag.bsky.social Lab Head at the WEHI and the Brain Cancer Center by CB4BC. BioinfoMagician using computational biology, spatial and single cell omics so that one day no lives will be lost to brain cancer.
Valentina Boeva @valboeva.bsky.social Computational Cancer Genomics Group
Marco Varrone @marcovarrone.bsky.social Postdoc in Computational Biology at @CirielloLab @dbc_unil.
Machine Learning for spatial omics.
https://batcheffect.com
Lana Garmire @lgarmire.bsky.social Faculty. multiomic. EMR. informatics. womenhealth.#mom of 2. PECASE awardee. Fellow AIMBE. DEI ✊. Opion's my own.
Joshua Bull @joshuabull.bsky.social Postdoc mathematician working in spatial biology and cancer at @oxfordmathematics.bsky.social @ox.ac.uk
Developer of https://docs.muspan.co.uk
Charlotte Bunne @bunnech.bsky.social Assistant Professor at @EPFL in Computer Science and Life Sciences. PostDoc at @Genentech and @Stanford. PhD at @ETH and @BroadInstitute.
www.aimm.epfl.ch
Eray Sahin @eraysahin.bsky.social Bioinformatician at Universitätsklinikum Würzburg
Spatial trx, neonatal immunity, multi-omics, gut-brain axis
he/him 🏳️🌈
LinkedIn: https://www.linkedin.com/in/eray-sahin
Elisabetta Mereu @elimereu.bsky.social Group leader at the Josep Carreras Leukemia Research Institute. Passionate of single-cell genomics and ML! Advancing personalized therapies for cancer and beyond. #singlecellgenomics #Immunotherapy
Arjun Krishnan @compbiologist.bsky.social ML/AI methods & tools for using massive public data collections to gain insights into complex disease mechanisms.
Associate Professor & Group leader thekrishnanlab.org at the Dept. of Biomedical Informatics at CU Anschutz.
Laura Cantini @cantinilab.bsky.social PI of the machine learning for Integrative genomics lab @pasteur.fr and @CNRS.bsky.social
#NewPI #DiversityEqualityInclusion
Single-cell, multi-omics, machine learning
Yu Xu @yuxu.bsky.social Senior Research Associate at Cambridge University
Genetic prediction, Multi-omics, Health data science, Machine Learning
Ethan Weinberger @ethanweinberger.bsky.social Ph.D student in Computer Science and Engineering at the University of Washington working with Su-In Lee.
Rhydian Windsor @rwinds.bsky.social ML Research Scientist at Oxford Nanopore Technologies, mostly working on assembly & variant calling 🧬
Erstwhile physicist and computer vision DPhil @Oxford_VGG 👁️💻
Average chess player and runner.
Oxford Nanopore @nanoporetech.com 🌍Direct DNA/RNA analysis for anyone, anywhere
🧬Short to ultra-long reads in real-time for rapid insights
🔬Products for research use only
Niema Moshiri @niema.net Associate Teaching Professor of Computer Science at UC San Diego, consulting for PlayStation and Blizzard, Bioinformatician by training, SD-raised. https://niema.net
Milot Mirdita @milot.bsky.social Open source #bioinformatics at Sungkyunkwan University 🇰🇷 | former Steinegger Lab @ SNU, Söding Lab @ MPI-NAT | http://mstdn.science/@milotmirdita
@luizirber.bsky.social @luizirber.bsky.social
Jeff Gentry @geoffjentry.bsky.social Noted curmudgeon. Software, biotech, food & drink. All opinions my own, no one else wants them anyways.
Jim Shaw @jimshaw.bsky.social Postdoc at Dana-Farber and Harvard Med with Heng Li (@lh3lh3.bsky.social). Prev: UBC / UofT.
I like thinking about biological sequence analysis and its applications to metagenomics / microbial genomics.
https://jim-shaw-bluenote.github.io
Sabrina Nystrom @snystrom.com Data science, genomics, software development. Formerly: Eukaryotic gene regulation, phage, graph genomes. On hiatus building distributed systems.
snystrom.com
raw9371 @raw937.bsky.social UNC Charlotte Associate Professor in Bioinformatics and Genomics. Computational molecular synthetic virologist.
Github - github.com/raw-lab
Website - rawlab.org
Matt Holt @holtjma.bsky.social Staff scientist at @PacBio; formerly @hudsonalpha; avid gamer; opinions are my own
Tommi Mäklin @themaklin.bsky.social I do statistics, bacterial (meta)genomics and bioinformatics software development.
Tessa Pierce Ward, PhD @bluegenes.bsky.social Genomics/metagenomics, bioinformatics, open science. Asst Researcher @ UC Davis, remote from San Diego. Budding rustacean.
Formerly: @Scripps_Ocean, @Stanford. Nature lover and book fiend. she/her.
Ilia Minkin @minkinpark.bsky.social Research Associate @ UConn | Algorithms, Genomics, Python, C++
Alexis Battle @alexisbattle.bsky.social Professor at Johns Hopkins Biomedical Engineering and CS, Director Malone Center for Engineering in Healthcare, Research Director (Strategy and Partnerships) Data Science and AI Institute
Fulcrum Genomics @fulcrumgenomics.com We provide specialized bioinformatic services to advance your technology and the understanding of human disease.
https://www.fulcrumgenomics.com
Sean Simmons @seankenneths.bsky.social Computational biologist at the Broad Institute
Yoann Dufresne (PhD) @yoann.bsky.social Bioinformatics and Computer Science account of Yoann Dufresne. Researcher & teacher at @univlille.bsky.social.
Alternative controleur game dev account : @collectifartefact.bsky.social
Personal account : @docteursid.bsky.social
Ragnar {Groot Koerkamp} @curiouscoding.nl Postdoc on high troughput bioinformatics @ KIT Karlsruhe;
IMO, ICPC, Xoogler, Rust, road-cycling, hiking, wild camping, photography
Clint Valentine @moonlight.bio Interested in how mutations form in DNA, adventure cycling, bioinformatics, and hand-rolled pasta. Professional crud & stuff wrangler, aspiring artisanal software author. Opinions are my own. Unless they're good; then my employer might want them.
Armin Töpfer @armintoepfer.com Husband. Parent. Dr sc @ETH. Bioinformagician. Father of @PacBio HiFi. C++ Purist. Geek. Digital Artist. Electronic music. Speaks in memes. Opinions are my own!
Mohsen Zakeri @mohsenzakeri.bsky.social Postdoctoral Fellow at Johns Hopkins University, Computational Biology ❤️
www.mohsenzakeri.com
Giulio Ermanno Pibiri @jermp.bsky.social Associate Prof. of CS at Ca' Foscari University of Venice. Indexing, Data Compression, Algorithms.
Igor Martayan @imartayan.bsky.social PhD in algorithmic bioinformatics at @bonsaiseqbioinfo.bsky.social.
Interested in space-efficient data structures, sketching algorithms & high-performance computing
https://igor.martayan.org
Seth Stadick @ducktapeprogrammer.bsky.social Bioinformatics. Rust. Mojo.
Yann Ponty @yannponty.bsky.social Bioinformatics researcher (CS PhD) • #RNA enthusiast • AI-skeptic but rational • Employed by #CNRS/#Polytechnique but views mine
Jarno N. Alanko @jnalanko.bsky.social Postdoc in computer science and bioinformatics from Finland. Website: https://jnalanko.net. Various writings in English and Finnish: https://blog.jnalanko.net. Also on Mastodon: https://genomic.social/@jnalanko- D Daniel Liu @daniel-c0deb0t.bsky.social work: anthropic, previously: rust/bioinformatics
Jian Ma @jianma.bsky.social Ray and Stephanie Lane Professor of Computational Biology at CMU School of Computer Science. https://www.cs.cmu.edu/~jianma/
Lukas Weber @lmweber.bsky.social Assistant Professor of Biostatistics, Boston University. Statistical genomics, genomic data science, open science, R programming https://lmweber.org/
Ragothaman Yennamalli @structbioinfo.bsky.social Associate Professor JNU | Computational Biologist | YIM2024 organizer | Editor: CSBJ, BMC Bioinfo | Spl issue Ed: Biophys J | He/Him.
Fereydoun Hormozdiari @fhormozd.bsky.social Associate Professor @ UC-Davis | Former Senior Director @ Exai Bio | Computational Biology, ML/AI, Genomics, RNA, Cancer
Isaac Virshup @ivirshup.bsky.social Software engineer at CZI, https://scverse.org steering council, check out my https://github.com/ivirshup
Johannes Köster @johanneskoester.bsky.social Professor for Bioinformatics and Computational Oncology
University of Duisburg-Essen
Author of Snakemake, founder of Bioconda
Mervin Fansler @mfansler.bsky.social Postdoc in Cvejic Group, BRIC, Københavns Universitet. PhD from Mayr Lab at Sloan Kettering Institute. Reproducible research enthusiast. Conda Forge R Team. Creator of scUTRquant.
Alex Dobin @alexdobin.com Dad, Homelab, Engineering Manager @ Microsoft
Samuel Lampa @smllmp.bsky.social Fascinated by Living Systems | Clin Micro Bioinfo @ Karolinska | PhD http://pharmb.io | Reproducibility, #SciWorkflows | Curious: Genomic Algos, TEs
R&D: livingsystems.cc
Thinking: livingsystems.substack.com
Married. Dad. Sinner saved by grace.
Ben Kaminow @bkaminow.bsky.social PhD student working at the intersection of ML and drug discovery in the Chodera Lab
Timothy Stiles @stiles.io Genetic, research, and software engineer looking to make friends.
Creator of Poly, an open source Go package for engineering DNA 🧬
Let's engineer weird little guys together.
github.com/bebop/poly
📍San Francisco
Anna Poetsch @apoetsch.bsky.social Computational Biologist at TU Dresden. Interested in how genomes encode their own stability.
Kez Cleal @kezc.bsky.social Lecturer in cancer bioinformatics at Cardiff University. https://github.com/kcleal
Nathan Roach @natproach.bsky.social Bad opinion haver, leftist, scientist, bioinformatics PhD, Rust lang enthusiast, Python begrudging-acceptor, in that order.