Davis Bennett @davisvbennett.bsky.social Open source software developer. I spend a lot of time working on Zarr. Formerly worked on bioimaging data stuff @hhmijanelia.bsky.social
Gaspar Jekely @jekely.biologists.social.ap.brid.gy Professor at the Centre for Organismal Studies (COS), University of Heidelberg, Germany
and at the
Living Systems Institute (LSI), University of Exeter, UK […]
🌉 bridged from ⁂ https://biologists.social/@jekely, follow @ap.brid.gy to interact
Chris Schmidt @schmchris.bsky.social Scientific Project Manager at the German Cancer Research Center (DKFZ) in Heidelberg, project coordination for NFDI4BIOIMAGE and I3D:bio, biologist by training (immunology, biochemistry, cell biology)
ilastik-team.bsky.social @ilastik-team.bsky.social Anna Kreshuk's lab and the team behind ilastik write here about their latest research in machine learning for microscopy. Also, new ilastik features and releases get announced here! @EMBL
Nathan Spencer @nathantspencer.bsky.social CTO @ syGlass, building virtual reality solutions for the challenges faced by scientific researchers and educators.
John Ball @john-m-ball.bsky.social Computational vision neuroscientist and VGM enthusiast. Completely normal human person. Opinions expressed here are my own.
Brandy A Freitas @brandy-syglass.bsky.social Director of Data Science & Analytics @syGlass.io, making data beautiful. 🦠🔬📊 Enthusiast of all things microscopy, hiking, and cooking. Board member @NESM.
Harvard | Rochester Institute of Technology | Science Club for Girls
Johannes Soltwedel @jo-soltwedel.bsky.social Research software engineer @gerbi-gmb.de for all things #OME-ZARR, #NGFF, FAIR data.
Physicist, Python code-jockey, train enthusiast.
@tischi.bsky.social @tischi.bsky.social 
Alba Guembe @albaguembe.bsky.social SYSstems BIOlogy of infection LAB
@UABarcelona 🔬🧫💻
infection phenomics & multiomic networks
Virginie Uhlmann @virginieuhlmann.bsky.social Assistant Professor in Bioimaging and Data Analysis and Director of the BioVisionCenter at UZH; Research Group Leader at EMBL-EBI. Loves image analysis, mountains, and birds.
Anna Klemm @ahklemm.bsky.social BioImage Analyst
Head of BioImage Informatics, SciLifeLab
NBIS, Sweden
https://www.scilifelab.se/units/bioimage-informatics/
Jean-Yves Tinevez @jytinevez.bsky.social Research engineer and core facility manager at the Institut Pasteur
https://research.pasteur.fr/en/team/image-analysis-hub/
Everything #TrackMate #Mastodon-sc (the tool to track lineages in microscopy videos, not the social networks etc).
Views are my own
Ruth Hornbachner @rhornb.bsky.social PhD @ Pelkmans lab, University of Zurich
Bioimage Analysis | Developmental Biology
Hannah Heil @hannah-superres.bsky.social Microscopy enthusiast @NordenfeltLab @LundUniversity : #SuperResolution #SMLM #OpticalCellBiology #femalewithmicroscope All tweets represent my independent views🤓
Jan Funke @janfunkey.bsky.social Group leader at the Human Technopole
Sven Dorkenwald @sdorkenw.bsky.social Shanahan Fellow @Allen @UW and Researcher @Google
Manx Neurobiologist @garyrlewin.bsky.social Manxman Scientist. Neurobiologist, Group Leader, Interests: ion channels, extreme biology, mole-rats, sensory transduction, touch, pain, social brain, flying
www.mdc-berlin.de/lewin
VolumeEM @volumeem1.bsky.social Building an infrastructure for volume EM (vEM) to serve the bioscience research community one slice at at time.
Andreas Schaefer @andreas-t-schaefer.bsky.social Neuroscientist @crick.ac.uk asking how information is processed in the brain.
Odours. Circuits. Neurotechnology. Synchrotrons. BCIs.
Co-founder Paradromics
Twitter: @AndreasTSchafer
Arnd Roth @arndroth.bsky.social Computational neuroscience and connectomics
Max Planck Institute for Brain Research @mpibrain.bsky.social The Max Planck Institute for Brain Research in Frankfurt, Germany, is one of the world-leading institutions studying the neural circuits in the brain. Imprint: https://brain.mpg.de/imprint
Moritz Helmstaedter @mhlab.bsky.social We map the neuronal networks in our brains. Connectomics. Director, Max Planck Institute for Brain Research. Private account. www.brain.mpg.de/helmstaedter
Helene Schmidt @helenelab.bsky.social Group Leader at Ernst Struengmann Institute for Neuroscience in Frankfurt. The more synapses the better #connectomics. 
Simon Willison @simonwillison.net Independent AI researcher, creator of datasette.io and llm.datasette.io, building open source tools for data journalism, writing about a lot of stuff at https://simonwillison.net/
E11 Bio @e11bio.bsky.social A non-profit Focused Research Organization developing next-generation technology to accelerate neuroscience and improve human health. A part of Convergent Research.
Johan Winnubst @johanwinn.bsky.social 
Michael Winding @michael-winding.bsky.social Group Leader, the Francis Crick Institute.
Social Behaviour and Connectomics
https://www.crick.ac.uk/research/labs/michael-winding
Alex Hall @allopatry.bsky.social Scientist at Thermo Fisher Scientific. Interested in microscopy, open science, and reptiles+amphibians.
Michael Morehead @michael-syglass.bsky.social CEO & cofounder of @syGlassVR, a virtual reality science company.
computer scientist, startups, VR, and lover of microscopy.
Aaron Kuan @kuanawanda.bsky.social Assistant prof @yaleneuro.bsky.social: multiscale connectomics with EM and Xray; decision-making; brain-wide cortical networks.
Adrian Wanner @adrianawanner.bsky.social SERI-funded #ERCStG Group Leader at PSI https://structuralneurobiology.ch, CV Starr Fellow at Princeton Neuroscience Institute, founder of https://ariadne.ai
Carles Bosch @carlesbosch.bsky.social Scientist studying biological tissues with neuronal circuits inside. Tweets my own.
Aquí, tuitejo el què em passa pel cap molt de tant en tant.
trickymons@X
Jemima Burden @jemimaburden.bsky.social Electron microscopist @lmcb-ucl.bsky.social @ucllifesciences.bsky.social
who loves answering biological questions using EM #electronmicroscopy #CLEM #correlativemicroscopy #volumeEM 🔬🔬😄#workingmum she/her
nilay patel @reckless.bsky.social Editor-in-chief of The Verge, host of Decoder, cohost of The Vergecast. I am in love with spectacle.
@poehlmann.bsky.social @poehlmann.bsky.social 
Aubrey Weigel @avweigel.bsky.social Project Scientist - CellMap Project Team - HHMI Janelia Campus.
John Tuthill @tuthill.bsky.social Neuroscientist at University of Washington studying proprioception and motor control. Promoting the people and work in my lab (www.tuthill.casa). Also pursuing a snow fly side habit (www.snowflyproject.org).
Wei-Chung Allen Lee @darbly.bsky.social circuit motifs of action selection, execution, & refinement | functional connectomics | assoc prof | lee.hms.harvard.edu
Felix Geisendörfer @felixge.de Working at Datadog on Go Profiling, Performance, OpenTelemetry and more.
Before:
- Manufacturing Observability at Apple
- Co-founder at Transloadit
- Node.js Core Dev
Dr. Brianna R. Pagán @briannaritapagan.bsky.social Tech Lead @developmentseed
Formerly @NASA
Lecturer @ Loyola Marymount University
Founding Editorial Board Member @ Cloud-Native Geospatial
Steering Council Member @ Pangeo
open source enthusiast, ultra runner 
Jonathan Striebel @jstriebel.bsky.social Code Enthusiast & Software Engineer, he/him.
💻 Python, Medical Image Processing, Distributed Computing, Data Science & ML
🌐 jonathanstriebel.de
📝 codical.org
Kristina Micheva @kdmicheva.bsky.social Neuroscientist, array tomographist, learner of languages and martial arts
Kimberly Meechan @k-meech.bsky.social Research Software Engineer at UCL ARC (formerly postdoc at British Museum) | Microscopy, image analysis & software development | @KMeech@fosstodon.org
Paolo Ronchi @paoloronchi.bsky.social Electron microscopist, cell biologist, cyclist
Stephan Preibisch @preibischs.bsky.social Open Science Software Enthusiast - Director of Scientific Computing Software at HHMI Janelia
Rita Strack @ritastrack.bsky.social Chief Editor of Nature Biomedical Engineering. Ph.D. Previously at Nature Methods. @rita_strack on the place formerly known as twitter.
Sebastian Munck @sebastianmunck.bsky.social VIB BioImaging Core in Leuven, microscopes, image analysis, neurons, tomography, sometimes food, weird things, life, opinions are my own
Marie Held @makaefer.bsky.social Image analyst at the Centre for Cell Imaging, the University of Liverpool.
didyouknowimageanalysis.wordpress.com
CCI.liv.ac.uk
Alexandra Pacureanu @apacureanu.bsky.social Scientist at ESRF
Fabio Niephaus @fniephaus.com Research Manager on the @graalvm.org team at Oracle. Graal Languages, Native Image, developer tools, GraalVM developer experience. Previously at @hpi.bsky.social, @googlecolab.bsky.social, and @matonguitars.bsky.social. Views are my own.
Julia Fernandez-Rodriguez @juliafrodri.bsky.social Head of the Centre for Cellular Imaging, Gothenburg, Sweden. President of the Core Technologies for Life Sciences, CTLS, Association
jordan jordan jordan @jordan.matelsky.com making computers better using brains and making brains better using computers. computational neuro and dumb little web apps
sticking a steam wand directly into my brain and frothing it like a cappuccino at @kordinglab. senior research scientist at JHU/APL
Joe Hamman @jhamman.bsky.social Climate scientist, engineer and human. Co-founder/CTO @earthmoverHQ. @xarray_dev / @pangeo_data dev. Formerly
@carbonplanorg, @NCAR_Science, and @uw_cee. He/him.
Casey Schneider-Mizell @csdashm.com Assistant Investigator at Allen Institute for Brain Science. Formerly Janelia, Universität Zürich, and U Mich Physics.
Building bottom-up insight into the brain from synaptic resolution connectomics and making computational tools to help you do that too.
Mark @mkeller7.bsky.social Researcher in bioinformatics working on single-cell data visualization
https://markk.co
Ken Ho @drkenho.bsky.social 
Cas @caswognum.nl Trying to teach machines (and myself) drug discovery at Valence Labs and Polaris.
www.caswognum.nl
🇳🇱🇨🇦
@ilanbassgold.bsky.social @ilanbassgold.bsky.social 
Sanket Verma @sanketverma1704.bsky.social Open Source Scientific Software and Communities — https://bsky.app/profile/zarr.dev, https://scientific-python.org/, https://bsky.app/profile/ossci.bsky.social, and more. ;)
Past: Forensics, Dunnhumby, startups and organisations.
https://sanketverma.com/
Christian Puller @christianpuller.bsky.social Neuroscientist at Max Planck Institute for Neurobiology of Behavior. Interested in vision, retina research, and gravel/road cycling.
John Bogovic @bogovicj.bsky.social 
Stephan Saalfeld @herrsaalfeld.bsky.social scalable data analysis, modeling, AI, software design at HHMI Janelia
https://mastodon.social/@herrsaalfeld
Siân Culley @superresolusian.bsky.social Still seeking M. Ulder for joint author paper.
Microscopes ✅ cats ✅ combining the two ❌
Lab --> https://www.kcl.ac.uk/research/culley-group
OME @openmicroscopy.org OME is a consortium of universities, research labs, industry and developers producing open-source software and format standards for microscopy data.
https://www.openmicroscopy.org/
Wan-Qing Yu @wanqingyu.bsky.social Scientist @AllenInstitute,
Past: Postdoc in Rachel Wong lab
amateur pianist, stargazer, #FirstGen (she/her)
Zarr @zarr.dev Chunked, Compressed, & Cloud-native N-dimensional arrays
See https://zarr.dev/ for more information.
Tom Kazimiers @tomkazimiers.bsky.social CATMAID, Science, Research Software, OpenSource, GIS, Forestry, timberNet, kazmos GmbH
Jack Kelly @jack-kelly.com Building open source ML to reduce CO₂ emissions from the electricity grid
• Python, climate, forecasting weather & energy, AI, open data & science, Rust
• Now: Co-founder @openclimatefix.org
• Prev: DeepMind, NESO, Imperial
• https://github.com/jackkelly
@will-j-moore.bsky.social @will-j-moore.bsky.social 
Daniel Krentzel @danielkrentzel.bsky.social Hunting for new antibiotics with deep learning at @pasteur.fr 🧫 | Previously @crick.ac.uk and 🎓 @imperialcollegeldn.bsky.social
Peter Sobolewski @psobolewskiphd.bsky.social #Duke #UCSD Alum; Recovering Academic; Research IT
@jacksonlab.bsky.social; core dev @napari.fosstodon.org.ap.brid.gy
Nila @oncemagicbraineel.bsky.social connectomics | postdoc in Rainer Friedrich's lab @FMIscience.bsky.social | first-gen academic | managing position in a one-parent family
Aafke Gros @aafkegros.bsky.social Check out Microscopy Nodes for handling microscopy data in Blender! Now loading .tif and OME-Zarr with big volume support :)
she/her | IPA: ˈafkə ɡrɔs
Erick Ratamero @erickratamero.com Cross-posting from idlethumbs.social/@ratamero
half respectable professional (can you believe they let me manage data at EMBL?), half nerdy gremlin. views my own etc etc. he/him/ele
https://erickratamero.com
Constantin Pape @cppape.bsky.social Group leader @ Uni Göttingen for Computational Cell Analytics and @ MPINAT for Machine Intelligence in the Life Sciences. AI for biology and medicine with a focus on microscopy.
https://user.informatik.uni-goettingen.de/~pape41/
Natalie Holroyd @natalieah.bsky.social I'm a medical imaging and deep learning scientist at UCL. I love running, hiking and gaming
🔬🏃🏻♀️🥾🎮
Martin Jones @martinjones.bsky.social Ex-physicist in a biology institute, working on image analysis and building new hardware at the Francis Crick Institute
ORCID: 0000-0003-0994-5652
WEBKNOSSOS @webknossos.org Visualize, share, segment, and annotate your large 3D images online.
Dave Barry @david-j-barry.bsky.social BioImage Data Analysis at @crick.ac.uk: @crick-ia-team.bsky.social
Science → Reproducible as Data Analysis → Automated
Dubliner 🇮🇪 in London 🇬🇧 | Brunch sceptic | Trophy husband | Dissipator of masculine energy
Bryan Cantrill @bcantrill.bsky.social Co-founder and CTO of Oxide Computer Company. According to Field of Schemes, "tech exec and Oakland A's fan" -- but more of an Oakland Ballers fan now.
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social NFDI4BIOIMAGE, a consortium of the NFDI in Germany, is a legally non-independent collaboration project. It focuses on research data management for bioimaging and image analysis. The consortium does not act autonomously towards third parties.
@lorenzocerrone.bsky.social @lorenzocerrone.bsky.social 
Joel Lüthi @joelluethi.bsky.social Head of Research and Development of the BioVisionCenter at the University of Zurich
David Stansby @dstansby.bsky.social Research Software Engineer in bioimaging // I run the Human Organ Atlas (@humanorganatlas.bsky.social) // cyclist // walker
Josh Moore @joshmoore.bsky.social Standardizing open bioimaging data infrastructure
Technical Director – @gerbi-gmb.de
Member & Co-Founder – @image.coop
TA1 Lead – @nfdi4bioimage.bsky.social
#OSS Maintainer for @openmicroscopy.org and @zarr.dev
Florian Jug @florianjug.bsky.social Computer scientist on a life-science mission. Working on pushing bioimage analysis, computer vision, AI/ML methods for the life sciences. Love running and pottery.
Anne Carpenter @drannecarpenter.bsky.social Dedicated to drug discovery, enthralled by science. 5 kids. She. SAB Recursion. Founder SyzOnc. Lab at Broad Institute. Opinions my own.
BWJones @bwjones.bsky.social Bryan William Jones
Neuroscientist
Vision Neuroscientist
Connectomics / VolumeEM
Photographer / #Leica
Professing at Pitt
In the data
bryanwjones.com
ORCID 0000-0001-5527-6643